PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1167830.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GATA

Protein Properties

Length: 541aa MW: 59991.5 Da PI: 7.2564

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1167830.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49.8	4.5e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Pd.00g1167830.m01 7 CYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGT 41 **************55555*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence
MGKQGPCYHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDDYEDH 60 RVSRVKSISI NKNKEIKLVK RKQNPDSVMV GGVAADYAHG FRKVTDEDTS NRSSSGSAVS 120 NSESCAQFGS ADASDLTGPA QSMVWDSMVP SRKRTCIGRP KPSPVEKLTK DLYTILHEQQ 180 SSYFSGSSEE DLLFECETPM VSVEIGHGSV LMRHPSSITR EEESEASSLS VDNKQCHINE 240 AYSHPATLLV HNNKGIIMTS SVTGKMNNLA GQGMQQEPLK RDKSQYDNFQ ILGNHNSPLC 300 HVDLNDILNF EEFTRQLTNE EQQQLLKHLP PVDVKFPYSL KSMFDSSQFR ENLTSLQQLL 360 AEGVFDISFL GAKTEDCKTL KRLVLSNSSK SKWVERYHLL KKCKTSPGKS VISGPNALAS 420 SNFRHVKRLR DSETQSFPDV KMMMKSPKRI IVKGSNENKD LLDYDGSCFS PRSLFALPAD 480 GSSLLMESMN FVDESSDQDL LLDLPSNGSF TQAELLHPAM SFGAQQASTS SSSIYPHVLH 540 P

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence

MGKQGPCYHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDDYEDH  60
RVSRVKSISI NKNKEIKLVK RKQNPDSVMV GGVAADYAHG FRKVTDEDTS NRSSSGSAVS  120
NSESCAQFGS ADASDLTGPA QSMVWDSMVP SRKRTCIGRP KPSPVEKLTK DLYTILHEQQ  180
SSYFSGSSEE DLLFECETPM VSVEIGHGSV LMRHPSSITR EEESEASSLS VDNKQCHINE  240
AYSHPATLLV HNNKGIIMTS SVTGKMNNLA GQGMQQEPLK RDKSQYDNFQ ILGNHNSPLC  300
HVDLNDILNF EEFTRQLTNE EQQQLLKHLP PVDVKFPYSL KSMFDSSQFR ENLTSLQQLL  360
AEGVFDISFL GAKTEDCKTL KRLVLSNSSK SKWVERYHLL KKCKTSPGKS VISGPNALAS  420
SNFRHVKRLR DSETQSFPDV KMMMKSPKRI IVKGSNENKD LLDYDGSCFS PRSLFALPAD  480
GSSLLMESMN FVDESSDQDL LLDLPSNGSF TQAELLHPAM SFGAQQASTS SSSIYPHVLH  540
P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-150	GATA family protein