PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g1163730.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 423aa MW: 46551.7 Da PI: 7.7243 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.8 | 8.8e-09 | 134 | 154 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C +++r G C++Gd+C FaHg Pd.00g1163730.m01 134 VCADYRR-GSCSRGDSCEFAHG 154 799****.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence |
MTSVCAEQQH KFHPSHQLLS SKKSLHNTTI DIPPRKLLTH RTQTQDFTSS SPEMYSPSFS 60 TADEALLLKF LPYSDEDDAN SSDPYSSDHF RMFEFKVRRC TRSRSHDWTD CPFAHPGEKA 120 RRRDPRRYHY SGTVCADYRR GSCSRGDSCE FAHGVFECWL HPARYRTEAC KDGKQCKRKV 180 CFFAHTPRQL RVLPIQSSAD HTAAALSPTP KKKYGHLSNS VGSPGSNKHC CLFCHSAVTT 240 SSPTSTLLGM SHLSPPLSPA GNHHSSVNGF HNSPVMSRCS GLGLGLDQMH ASTAGMMSYK 300 DVLAELMSSL EAVKFSESAA ASPINPNAPR WVDVSFNSTD DLDQQQQFIL SPSTPSPSRP 360 FGGRGINFSD GDENASSRKS SLLGFDDNYY KPNNINDEII NGGGGSGSGS SDPDLGWVNE 420 LLM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03790.1 | 1e-85 | C3H family protein |