PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g1162200.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 229aa MW: 25833.8 Da PI: 4.405 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 97.8 | 1.1e-30 | 8 | 109 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C aCk+l+++C+++C++apyf +e+ +f +h +FGas+++++l+ lp +er a ++++eA+ara dP yG+v+ il+lq+q+ + + Pd.00g1162200.m01 8 PCGACKFLKKRCKRGCIFAPYFMHEEaIMDFSSIHNVFGASKMSRILSMLPMSERAVASWTMTFEAHARAVDPTYGCVSYILDLQEQVLNIQ 99 7*********************9998469*************************************************************** PP DUF260 92 aelallkeel 101 a l++++e+l Pd.00g1162200.m01 100 ARLDEAHEQL 109 ****999985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence |
MSSRTFNPCG ACKFLKKRCK RGCIFAPYFM HEEAIMDFSS IHNVFGASKM SRILSMLPMS 60 ERAVASWTMT FEAHARAVDP TYGCVSYILD LQEQVLNIQA RLDEAHEQLA RAVAPVANPN 120 QDLENSNEQS EVANPTEQAA VAKPTEFESL PQFSFTHTNN VDNENMNLNY HVSGSYKNTV 180 NIPTENVADG WVNNEGTSSM SFFDMEWSFE DVDELLVDPW FSTYISNIN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 1e-42 | LBD family protein |