PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1161040.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GATA

Protein Properties

Length: 762aa MW: 84460.1 Da PI: 7.7648

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1161040.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	22.5	1.5e-07	529	548	1	20
GATA 1 CsnCgttkTplWRrgpdgnk 20 Cs C tt+TplWR gp g+k Pd.00g1161040.m01 529 CSDCMTTETPLWRGGPAGPK 548 ******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 762 aa Download sequence
MSLRPNARAE VRRNRYKVAV DAEEGRRRRE DNMVEIRKNR REESLQKKRR EGLQPPQLSS 60 NLHSSGLEKK LEHLPSMVAG VWSDESSLQL EATTQFRKLL SIERSPPIEE VIQSGVVPRF 120 VEFLMREDFP QLQFEAAWAL TNIASGTSEN TKVVIDHGAV PIFVKLLSSP SDDVREQAVW 180 ALGNVAGDSP RCRDLVLGNG ALIPLLSQLN EHAKLSMLRN ATWTLSNFCR GKPQPPFDQV 240 KPALPALARL IHSNDEEVLT DACWALSYLS DGTNDKIQAV IESGVCPRLV ELLLHPSPSV 300 LIPALRTVGN IVTGDDMQTQ VIIQHQALPC LLTLLTNNYK KSIKKEACWT ISNITAGNKD 360 QIKAVIDAGI IAPLVSLLQG AEFDIKKEAA WAISNATSGG SHEQIKILVD QGCIKPLCDL 420 LICPDPRIVT VCLEGLENIL KVGEAEKNLG TTGGVNLYAQ VIDDAEGRCF SNWVQLWREW 480 HANCPIRRIQ LQLEKSSSLH SEVLEYGKAI IRSGQEPFPQ AMNGNKKRCS DCMTTETPLW 540 RGGPAGPKNK DLASLVTVIV FDTETTGFSR ERDHIIEIAL QDLEGGENSA FQTLVNPERR 600 VLNSHIHGIT TNMVNRPDVP RMEDLIPILL KYVKSRQKPG GCVLFVAHNA RTFDVPFLCN 660 AFRRCGVDIP SDWLFKDTLP MGREAMKSEG SKPSSRSISL QALREHLGIP LDGSAHRAMS 720 DVKVLAAVFQ RLTYMLKLPL ASLVEDAFTA SEIGTPKKKS SR

Sequence ? help Back to Top

Protein Sequence Length: 762 aa Download sequence

MSLRPNARAE VRRNRYKVAV DAEEGRRRRE DNMVEIRKNR REESLQKKRR EGLQPPQLSS  60
NLHSSGLEKK LEHLPSMVAG VWSDESSLQL EATTQFRKLL SIERSPPIEE VIQSGVVPRF  120
VEFLMREDFP QLQFEAAWAL TNIASGTSEN TKVVIDHGAV PIFVKLLSSP SDDVREQAVW  180
ALGNVAGDSP RCRDLVLGNG ALIPLLSQLN EHAKLSMLRN ATWTLSNFCR GKPQPPFDQV  240
KPALPALARL IHSNDEEVLT DACWALSYLS DGTNDKIQAV IESGVCPRLV ELLLHPSPSV  300
LIPALRTVGN IVTGDDMQTQ VIIQHQALPC LLTLLTNNYK KSIKKEACWT ISNITAGNKD  360
QIKAVIDAGI IAPLVSLLQG AEFDIKKEAA WAISNATSGG SHEQIKILVD QGCIKPLCDL  420
LICPDPRIVT VCLEGLENIL KVGEAEKNLG TTGGVNLYAQ VIDDAEGRCF SNWVQLWREW  480
HANCPIRRIQ LQLEKSSSLH SEVLEYGKAI IRSGQEPFPQ AMNGNKKRCS DCMTTETPLW  540
RGGPAGPKNK DLASLVTVIV FDTETTGFSR ERDHIIEIAL QDLEGGENSA FQTLVNPERR  600
VLNSHIHGIT TNMVNRPDVP RMEDLIPILL KYVKSRQKPG GCVLFVAHNA RTFDVPFLCN  660
AFRRCGVDIP SDWLFKDTLP MGREAMKSEG SKPSSRSISL QALREHLGIP LDGSAHRAMS  720
DVKVLAAVFQ RLTYMLKLPL ASLVEDAFTA SEIGTPKKKS SR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49300.1	1e-07	GATA family protein