PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1152980.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 702aa MW: 77835.2 Da PI: 7.05

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1152980.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.7	4.2e-08	124	143	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa+ G+C +G +CkF H Pd.00g1152980.m01 124 ICDFFAK-GWCIRGTSCKFVH 143 6****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence
MDISDSPVQA RDHHNDVRQD YKPEGLDDDD GKVYLRHSEV MDAKASNSSG VAGEEMADAI 60 LMRDHLGKEV KSVMNPEDEM KQGNIHPRND RKQMDSRSAA SEKVTRIMSP VAETSDRNKR 120 PAIICDFFAK GWCIRGTSCK FVHIKDSRNS THPQGDVAAA NCTREVQPDE GLRDITERSR 180 SPGFPDPLAS SHLSSEKIRF SEHRGIQRWH QSLENHKFPA VPGEESNMGE STDSQKLHSS 240 KNDQVFLSSF KDVGRDGHAR NWPVDGYNNS PIHKDNSKFM SGLHPEPGFF SNGSTASSDK 300 YSRGNPTSQS SCMEEPAGIW SQRMHSDHNS PLVSLSLNSN SSNLLTNGSF PASRISSWTG 360 FSLPSSYSCL DASPHGTQKL LDRSRDYRYS TRSSPLLKGS SPFSSSELKK LPFTSVSLCS 420 DKLQTKISSN DWEPSVPFRP SFILPPAFLS SSGSQYDPLR DSIELPKLAN ISFEASFYSE 480 EAVIGNKLHH QIHGESVSGT MRPVCDGDTN SMSSHNTYHE KVLDNSCYTR EHNSPVTEAE 540 TVGASVVCQN GTMTIEENLS GPSHLKGSTK LHKTSSYGDS RPPSDGSRHK KDITVDRFRE 600 NNEVDGELGT DGDVQQESKS LRHFRAALVE LVKELLKPKW REGCLSKDAH NKIVKKAVEK 660 VLSAFQPQQI PPTVETVVQY LSSCRPKISK LVEGYVEKYG KS

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence

MDISDSPVQA RDHHNDVRQD YKPEGLDDDD GKVYLRHSEV MDAKASNSSG VAGEEMADAI  60
LMRDHLGKEV KSVMNPEDEM KQGNIHPRND RKQMDSRSAA SEKVTRIMSP VAETSDRNKR  120
PAIICDFFAK GWCIRGTSCK FVHIKDSRNS THPQGDVAAA NCTREVQPDE GLRDITERSR  180
SPGFPDPLAS SHLSSEKIRF SEHRGIQRWH QSLENHKFPA VPGEESNMGE STDSQKLHSS  240
KNDQVFLSSF KDVGRDGHAR NWPVDGYNNS PIHKDNSKFM SGLHPEPGFF SNGSTASSDK  300
YSRGNPTSQS SCMEEPAGIW SQRMHSDHNS PLVSLSLNSN SSNLLTNGSF PASRISSWTG  360
FSLPSSYSCL DASPHGTQKL LDRSRDYRYS TRSSPLLKGS SPFSSSELKK LPFTSVSLCS  420
DKLQTKISSN DWEPSVPFRP SFILPPAFLS SSGSQYDPLR DSIELPKLAN ISFEASFYSE  480
EAVIGNKLHH QIHGESVSGT MRPVCDGDTN SMSSHNTYHE KVLDNSCYTR EHNSPVTEAE  540
TVGASVVCQN GTMTIEENLS GPSHLKGSTK LHKTSSYGDS RPPSDGSRHK KDITVDRFRE  600
NNEVDGELGT DGDVQQESKS LRHFRAALVE LVKELLKPKW REGCLSKDAH NKIVKKAVEK  660
VLSAFQPQQI PPTVETVVQY LSSCRPKISK LVEGYVEKYG KS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-38	C3H family protein