PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1144410.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 1038aa MW: 114020 Da PI: 5.0906

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1144410.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.5	1.5e-18	37	83	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l Pd.00g1144410.m01 37 KGQWTPEEDEILRRAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83 799**************************9.**********986 PP
2	Myb_DNA-binding	64.4	2.2e-20	89	135	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde ++++vk++G++ W+tIa++++ gR +kqc++rw+++l Pd.00g1144410.m01 89 KGPWSKEEDEVIIELVKKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 135 79****************************.***********97 PP
3	Myb_DNA-binding	47.1	5.5e-15	141	183	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT++E++ l++a++++G++ W+ + ++ gRt++ +k++w+ Pd.00g1144410.m01 141 KEAWTQDEELALIRAHQMYGNK-WAELTKFLP-GRTDNAIKNHWN 183 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1038 aa Download sequence
MEGDRTNSTP SEGLGDSIQK VRALHGRTSG PTRRSTKGQW TPEEDEILRR AVQRFKGKNW 60 KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEVI IELVKKYGPK KWSTIAQHLP 120 GRIGKQCRER WHNHLNPGIN KEAWTQDEEL ALIRAHQMYG NKWAELTKFL PGRTDNAIKN 180 HWNSSVKKKL DSYLKSGLLT QFQGLPHVGH QNQSVLSSSS RMQSSGDDSG AKAAEGEEIS 240 ECSQDSTVAG CFLSTTEMTN VVPHPREEFQ INEVSRLGND PSCSPASCSE PYYPSVGDAT 300 FSIPEIPPEM VCSKFIEQNF SHEAGASMSG DFQFNLHELP INSSLECGQE SSRMHTHCVG 360 CNESHEGVNA PFQTSTSMGN MAVGFIKSEH MLISDDECCR VLFSDAMNGG CFSSGDFTNG 420 AHMVDLGACT DSVLLQPSNL QISETGRTSA SQVYHPLSSD VTGTSCSQVD SAHEGPLIYA 480 GEPSHLFRVQ EQEFVTNSND GFIYTNDSAS NDTGMQEQSD LVKDPSKLVP VNTFDSGLDS 540 QNCPVDVRSD EQTEQQDGGA LCYEPPRFPS LDIPFFSCDL VQSGNDMQQE YSPLGIRQLM 600 MSSMNCLTPY RLWDSPSRES SPDAVLKSAA KTFTGTPSIL KKRHRDLLSP LSPLSDRRID 660 KRLGTDLTSS LARDFSRLDV MFEDSEEKTT LLSPSSNKNR NSDSPSEDKE NKGTCESRIE 720 KGTDSTALSD DGIAHKDFDN GESQEKTKQF QGIADIDAKN KVDVVPTSQI AQQTSGVLVE 780 HNANDLLLCS PVGCKAEKAL GTSTRTPRSQ FRKSFEATNP GVPSKSFSAR QCSSVQSPTI 840 CVKKHESYSL VDTCVQSDSL SAPPETTGDN AGNDISIENI FGDTPFKRSI ESPSAWKSPW 900 FINSFVPGPR VDTEISIEDI GFFMSPGDRS YDAIGLMKQI SEQTAAAYAN AQEVLGNETP 960 ETLFRERRKN QALVDPENNH GPPNQPGSSS LSAANVLVER RTLDFSECGT PGKGTENAKS 1020 SNAKTFSSPS SYLLKGCR

Sequence ? help Back to Top

Protein Sequence Length: 1038 aa Download sequence

MEGDRTNSTP SEGLGDSIQK VRALHGRTSG PTRRSTKGQW TPEEDEILRR AVQRFKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEVI IELVKKYGPK KWSTIAQHLP  120
GRIGKQCRER WHNHLNPGIN KEAWTQDEEL ALIRAHQMYG NKWAELTKFL PGRTDNAIKN  180
HWNSSVKKKL DSYLKSGLLT QFQGLPHVGH QNQSVLSSSS RMQSSGDDSG AKAAEGEEIS  240
ECSQDSTVAG CFLSTTEMTN VVPHPREEFQ INEVSRLGND PSCSPASCSE PYYPSVGDAT  300
FSIPEIPPEM VCSKFIEQNF SHEAGASMSG DFQFNLHELP INSSLECGQE SSRMHTHCVG  360
CNESHEGVNA PFQTSTSMGN MAVGFIKSEH MLISDDECCR VLFSDAMNGG CFSSGDFTNG  420
AHMVDLGACT DSVLLQPSNL QISETGRTSA SQVYHPLSSD VTGTSCSQVD SAHEGPLIYA  480
GEPSHLFRVQ EQEFVTNSND GFIYTNDSAS NDTGMQEQSD LVKDPSKLVP VNTFDSGLDS  540
QNCPVDVRSD EQTEQQDGGA LCYEPPRFPS LDIPFFSCDL VQSGNDMQQE YSPLGIRQLM  600
MSSMNCLTPY RLWDSPSRES SPDAVLKSAA KTFTGTPSIL KKRHRDLLSP LSPLSDRRID  660
KRLGTDLTSS LARDFSRLDV MFEDSEEKTT LLSPSSNKNR NSDSPSEDKE NKGTCESRIE  720
KGTDSTALSD DGIAHKDFDN GESQEKTKQF QGIADIDAKN KVDVVPTSQI AQQTSGVLVE  780
HNANDLLLCS PVGCKAEKAL GTSTRTPRSQ FRKSFEATNP GVPSKSFSAR QCSSVQSPTI  840
CVKKHESYSL VDTCVQSDSL SAPPETTGDN AGNDISIENI FGDTPFKRSI ESPSAWKSPW  900
FINSFVPGPR VDTEISIEDI GFFMSPGDRS YDAIGLMKQI SEQTAAAYAN AQEVLGNETP  960
ETLFRERRKN QALVDPENNH GPPNQPGSSS LSAANVLVER RTLDFSECGT PGKGTENAKS  1020
SNAKTFSSPS SYLLKGCR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.2	0.0	MYB family protein