PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1139620.m02
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 618aa    MW: 67414.7 Da    PI: 8.471
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1139620.m02genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS338.21.4e-1032476182374
               GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                        ++ L+e+A+a+s+g+ e+a ++L+rl +    +p+ ++ qRl  ++t AL++r++      ++  pp   +e  s+e++ +++l++++sP++
  Pd.00g1139620.m02 247 KQSLMEAATAISEGKSEAAAEILTRLTTSqvPNPRPNSEQRLLEVITLALKSRVNP-----VDYPPP--VTELFSQEHAGSTQLLYDLSPCF 331
                        578**********************988744677779******************9.....332222..2223499**************** PP

               GRAS  92 kfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                        +f++++aN aIlea+ ++    ++vH+iDfdi+qG+Q++ LlqaL++R ++ p +++iT+v++  +g +++l  ++++L+k+A++ gv +ef
  Pd.00g1139620.m02 332 RFGFMAANLAILEATLTDksatNKVHVIDFDIGQGGQYVLLLQALSARLNSLPaTVKITTVAD--NGGEDRLTMVRQNLSKVAKQHGVVLEF 421
                        **************9777678899*************************77665*********..77************************* PP

               GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                        n+ v+++l++l+ e+L ++p+E +aVn++++l++++desvs++++rde+L+ vk+lsP+vv+vveqe+++n+++F++r+ e++ yy al++s
  Pd.00g1139620.m02 422 NI-VSQKLAELNRESLGCEPDEPIAVNFAFKLYSMPDESVSTDNPRDELLRRVKGLSPRVVTVVEQELNTNTAPFMARVKETCGYYGALLES 512
                        *9.8**************************************************************************************** PP

               GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk...sdgyrveeesgslv 359
                        ++++ + +++er+k E++ l+r++ n vaceg++r+er+e ++kWr+r+++aGF+  p+s+++++  k  l+  +   + g++v+ee+g ++
  Pd.00g1139620.m02 513 MKSTEAGDNSERVKAEEA-LSRKLINSVACEGRDRVERCEVFGKWRARMGMAGFELRPMSQNMTEVLKQRLSSGNnrvNSGFTVKEENGGVC 603
                        *9888999**********.*******************************************9999988886544235789*********** PP

               GRAS 360 lgWkdrpLvsvSaWr 374
                        +gW +r+L+++SaWr
  Pd.00g1139620.m02 604 FGWISRTLTVASAWR 618
                        **************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    
MQSGFTGGAG AGGVPDFYSG GRSISIATAM NNHHQHPSQP PYHRSSLPGL FLDNPSSQIA  60
RQTQSQSQFQ TQNPSTLIGK RTLAEFQAHQ QQHHYHNPNQ NFYLRSLKPR TFQHSSPISP  120
LSPIDFSSSS TITGSDSSSS ASSLLSHQRF GLPLLQQLRP QPVHQTLPPA GSFVNNNPVQ  180
NQNRVVSGVD SEKKMISNRL QDEWSETIQN LIGPGPGQSQ KPLSPSPTSS SSSSSSVASP  240
ASSTCSKQSL MEAATAISEG KSEAAAEILT RLTTSQVPNP RPNSEQRLLE VITLALKSRV  300
NPVDYPPPVT ELFSQEHAGS TQLLYDLSPC FRFGFMAANL AILEATLTDK SATNKVHVID  360
FDIGQGGQYV LLLQALSARL NSLPATVKIT TVADNGGEDR LTMVRQNLSK VAKQHGVVLE  420
FNIVSQKLAE LNRESLGCEP DEPIAVNFAF KLYSMPDESV STDNPRDELL RRVKGLSPRV  480
VTVVEQELNT NTAPFMARVK ETCGYYGALL ESMKSTEAGD NSERVKAEEA LSRKLINSVA  540
CEGRDRVERC EVFGKWRARM GMAGFELRPM SQNMTEVLKQ RLSSGNNRVN SGFTVKEENG  600
GVCFGWISRT LTVASAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-152GRAS family protein