PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1136220.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

AP2

Protein Properties

Length: 483aa MW: 53834.4 Da PI: 8.015

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1136220.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.6	3e-18	59	108	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + + +r++lg+f tae Aa a++aa+++++g Pd.00g1136220.m02 59 HYRGVRQRP-WGKFAAEIRDP---N-KaARVWLGTFETAEAAALAYDAAALRFKG 108 7******.******9...3.35*********************9987 PP
2	AP2	55.8	1.2e-17	294	343	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr++k +g+W+AeIrdp +r r +lg+++t e Aa a+++a+++++g Pd.00g1136220.m02 294 HYRGVRQRK-WGKWAAEIRDP----IRaVRLWLGTYDTSEAAALAYDKAALSFKG 343 69****9.******7....358********************99887 PP

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence
MSAMVSALAQ VIGTTDQTPV VQVPAEPLVN PLPSAMELHD DQPPQLQAAQ NQGNVRRRHY 60 RGVRQRPWGK FAAEIRDPNK AARVWLGTFE TAEAAALAYD AAALRFKGSK AKLNFPERVQ 120 GGTELGYLTT TGPQDLAAGG SRRTELAHHN QPLSDHQYQP QANPNNVNFT QPDQYAQYFR 180 GAAPAGDFSN IYIIFYQYIN SQFHKVDRKH GKRPLPSDDE SEAKEEDQIF PVYSSRSQQD 240 TSVMISALAQ VIGNTDQTPL QQVQGNPLIT SQSSPAESQS QPELQDQGNA RRQHYRGVRQ 300 RKWGKWAAEI RDPIRAVRLW LGTYDTSEAA ALAYDKAALS FKGSKAKLNF PERVQESSEF 360 GNLTITSQQQ HNLNNPENVE RVQVTDPVVP NPPHQPISQP TYSNVFNYAP YVQGGSNNVD 420 YNVHQVLPSH ENYGPQILPT TSSTSSSMPS QQEELRRMQV GSSRSSSDLP NKYRKDFEGS 480 HSR

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence

MSAMVSALAQ VIGTTDQTPV VQVPAEPLVN PLPSAMELHD DQPPQLQAAQ NQGNVRRRHY  60
RGVRQRPWGK FAAEIRDPNK AARVWLGTFE TAEAAALAYD AAALRFKGSK AKLNFPERVQ  120
GGTELGYLTT TGPQDLAAGG SRRTELAHHN QPLSDHQYQP QANPNNVNFT QPDQYAQYFR  180
GAAPAGDFSN IYIIFYQYIN SQFHKVDRKH GKRPLPSDDE SEAKEEDQIF PVYSSRSQQD  240
TSVMISALAQ VIGNTDQTPL QQVQGNPLIT SQSSPAESQS QPELQDQGNA RRQHYRGVRQ  300
RKWGKWAAEI RDPIRAVRLW LGTYDTSEAA ALAYDKAALS FKGSKAKLNF PERVQESSEF  360
GNLTITSQQQ HNLNNPENVE RVQVTDPVVP NPPHQPISQP TYSNVFNYAP YVQGGSNNVD  420
YNVHQVLPSH ENYGPQILPT TSSTSSSMPS QQEELRRMQV GSSRSSSDLP NKYRKDFEGS  480
HSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61890.1	3e-39	ERF family protein