PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1136220.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family AP2
Protein Properties Length: 485aa    MW: 54068.7 Da    PI: 8.015
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1136220.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63e-1861110255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+++AeIrdp   + + +r++lg+f tae Aa a++aa+++++g
  Pd.00g1136220.m01  61 HYRGVRQRP-WGKFAAEIRDP---N-KaARVWLGTFETAEAAALAYDAAALRFKG 110
                        7********.**********9...3.35***********************9987 PP
2AP255.81.2e-17296345255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr++k +g+W+AeIrdp    +r  r +lg+++t e Aa a+++a+++++g
  Pd.00g1136220.m01 296 HYRGVRQRK-WGKWAAEIRDP----IRaVRLWLGTYDTSEAAALAYDKAALSFKG 345
                        69******9.**********7....358**********************99887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    
MSAMVSALAQ VIGTTDQTPV VQVPAEPLVN PLPSAMELHD DQPPQLQAAQ NQGFSNVRRR  60
HYRGVRQRPW GKFAAEIRDP NKAARVWLGT FETAEAAALA YDAAALRFKG SKAKLNFPER  120
VQGGTELGYL TTTGPQDLAA GGSRRTELAH HNQPLSDHQY QPQANPNNVN FTQPDQYAQY  180
FRGAAPAGDF SNIYIIFYQY INSQFHKVDR KHGKRPLPSD DESEAKEEDQ IFPVYSSRSQ  240
QDTSVMISAL AQVIGNTDQT PLQQVQGNPL ITSQSSPAES QSQPELQDQG NARRQHYRGV  300
RQRKWGKWAA EIRDPIRAVR LWLGTYDTSE AAALAYDKAA LSFKGSKAKL NFPERVQESS  360
EFGNLTITSQ QQHNLNNPEN VERVQVTDPV VPNPPHQPIS QPTYSNVFNY APYVQGGSNN  420
VDYNVHQVLP SHENYGPQIL PTTSSTSSSM PSQQEELRRM QVGSSRSSSD LPNKYRKDFE  480
GSHSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.13e-39ERF family protein