PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g1132130.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 230aa MW: 25606.9 Da PI: 9.1358 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.5 | 5.3e-09 | 98 | 122 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++ G+Ck+G+ CkF+H++ Pd.00g1132130.m01 98 EPPCAFHLKKGQCKFGAICKFHHSK 122 79*********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence |
MCPVSRLQLL HQHINLGFRV ERSLRIRRRT ISCCCCSRHS RHLQRLPLTC PNRLLPIRPD 60 PPSSWLAPDV EPGVKRPSED VYWKFLILIS KLPERPSEPP CAFHLKKGQC KFGAICKFHH 120 SKDILIPSAE QENTIGETGT TIQPEGTEFA VKPLVSFSPA LSFNSKELPV RPGEPDCPFY 180 LIGSCNLDPK AVQCLPIFGE RPGVIKGSDH IMSPGTKLGP PHGASRKVPT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-27 | C3H family protein |