PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1131090.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 368aa    MW: 40422.5 Da    PI: 7.6371
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1131090.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.8e-07133154426
                        ---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                        + C+ f++ G+C  Gd+C FaHg
  Pd.00g1131090.m01 133 AACPEFRK-GHCAKGDSCEFAHG 154
                        78******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    
MMLGEPTRLH PTLQVPPWDP FDDLTPTSPF SAPNPSVNVN SNAGNGDYSP LSPMFLDSLA  60
ALHRYLPSNE SDSLGDDPDM PMNPISCDQF RMFEFKVRRC ARGRSHDWTE CPYAHPGEKA  120
RRRDPRKYHY SGAACPEFRK GHCAKGDSCE FAHGVFECWL HPARYRTQPC KDGLGCHRRV  180
CFFAHTPEQL RVLPGQSPRT HGSGAFDSYS YGSSPTSILI SPPISPPSDS PPMSPNSPQL  240
GCNSVSELVA SMRNFKLAKM KMSAQPAWGP QMGSGFCSSP RGSALRPAFC SLPSTPTRTS  300
GRAGPGAVDL WDHPCEEEPA MERVESGRDI RARMYARLSK ENSMGRVGRV DSGMSAPDVG  360
WVSELVSE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-118C3H family protein