PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1130010.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 576aa MW: 65309.5 Da PI: 5.8587

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1130010.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.1	2.7e-29	380	464	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++ev+aLi +r+ +e+++++ k+p Weevs+ m + g++rs+k+Ck+kwen+nk+++k+k+++kkr + + +tc+yf+ql+ Pd.00g1130010.m01 380 RWPQSEVKALILVRSGIESKFQEPGVKGPVWEEVSALMGSMGYQRSAKRCKQKWENINKYFRKTKDSAKKR-PHNFKTCSYFNQLD 464 8*******************************************************************8.88889******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence
MQSNFDISEI GNQQHLMDIS NSCSPILPIF NHQKQNHHHH HFNQQPEQPE PYHISHLVHP 60 TPITHDLFQR QHLQALQQQG RLHWQLGPVN FKLGLNENSE NGESALLGAG LFDDENGDDP 120 RLLQSRMHNL GFKSWQTHEP MCWKPLDAAI PETNRKQKEA NEGDICKDLE NKYRLYGELE 180 AIYSLAKMGE ANQTGSGSAL TGENSPKNVD LPVPFCDPHD LNVAPTAQVR VDDGSEASIG 240 EESSPRKIQK RKRKRTMKKQ LSSVISFFES LVTQVMDHQE NLHKKYLEVI ERMDKERRER 300 EAAWRNQEAE NHKREAIAKV HEQALASSRE ALIVSYIEKI TGQRVNLPSR QAPLLLQPDN 360 LNEPPVEELT PFKIDHTNSR WPQSEVKALI LVRSGIESKF QEPGVKGPVW EEVSALMGSM 420 GYQRSAKRCK QKWENINKYF RKTKDSAKKR PHNFKTCSYF NQLDQLYSGT PITAPSSSSS 480 YYSSNPSASI YDNIPKQGFS DLLEAFVAGR EAGVAHNLSS GNFEISEMGS NRLDFDGIIG 540 GKVEDVQGDL GKEKGNREDE ENVDETEDTD DDDSDE

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence

MQSNFDISEI GNQQHLMDIS NSCSPILPIF NHQKQNHHHH HFNQQPEQPE PYHISHLVHP  60
TPITHDLFQR QHLQALQQQG RLHWQLGPVN FKLGLNENSE NGESALLGAG LFDDENGDDP  120
RLLQSRMHNL GFKSWQTHEP MCWKPLDAAI PETNRKQKEA NEGDICKDLE NKYRLYGELE  180
AIYSLAKMGE ANQTGSGSAL TGENSPKNVD LPVPFCDPHD LNVAPTAQVR VDDGSEASIG  240
EESSPRKIQK RKRKRTMKKQ LSSVISFFES LVTQVMDHQE NLHKKYLEVI ERMDKERRER  300
EAAWRNQEAE NHKREAIAKV HEQALASSRE ALIVSYIEKI TGQRVNLPSR QAPLLLQPDN  360
LNEPPVEELT PFKIDHTNSR WPQSEVKALI LVRSGIESKF QEPGVKGPVW EEVSALMGSM  420
GYQRSAKRCK QKWENINKYF RKTKDSAKKR PHNFKTCSYF NQLDQLYSGT PITAPSSSSS  480
YYSSNPSASI YDNIPKQGFS DLLEAFVAGR EAGVAHNLSS GNFEISEMGS NRLDFDGIIG  540
GKVEDVQGDL GKEKGNREDE ENVDETEDTD DDDSDE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	246	260	RKIQKRKRKRTMKKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	4e-47	Trihelix family protein