PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1127810.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

ARF

Protein Properties

Length: 667aa MW: 74305 Da PI: 8.8826

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1127810.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74	1.8e-23	96	196	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++ +k+a+e+ +++ + +++l +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF + Pd.00g1127810.m01 96 FCKILTASDTSTHGGFSVLRKHATEClppldMIQATPTQELNAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RG 185 99**************************9556666679********************************************..34 PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 +++el+v+v+r Pd.00g1127810.m01 186 DNGELRVGVRR 196 89999**98 PP
2	Auxin_resp	102	7.5e-34	222	301	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+ t++ F v+Y+Pr+ s+F++ ++k+++a+++k+svGmRfkm+fe+e+s+err++Gt+vgv dl++ +W++SkWrsLk Pd.00g1127810.m01 222 ASHALMTRTLFVVYYKPRT--SQFIIGLNKYLEAINNKFSVGMRFKMRFEGEESPERRFTGTIVGVGDLSS-QWSESKWRSLK 301 6899************6..9******************************************777.*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence
MEENPKRTPS KHNELPYAVT LRLKSVRAFQ RRRQTRFGGG DLYTELWKLC AGPLVDVPRP 60 GERVFYFPQG HMEQQSEPTS PDPCIPEPSK PTVHSFCKIL TASDTSTHGG FSVLRKHATE 120 CLPPLDMIQA TPTQELNAKD LHGYEWKFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDAF 180 VFLRGDNGEL RVGVRRLARQ QSPMPSSVIS SQSMHLGVLA TASHALMTRT LFVVYYKPRT 240 SQFIIGLNKY LEAINNKFSV GMRFKMRFEG EESPERRFTG TIVGVGDLSS QWSESKWRSL 300 KIQWDEHAAV QRPDRVSPWE IEPFVASAPI HLAQPVVKSK RPRPVEISSS EITTNSPASA 360 FWYHGSTQTV ELNQLGGVPE VQSSSSQVVW PLRQKESNSS SYSSSRVYSE GIWPSSPHVN 420 VSLSLFPDSK EGNKNVTTGS VLSSVASPVS SKASSKPSNT PIPGQVGKDK KSDSSDLWLF 480 GYNLTNNSKT ASPPESEPVC KAMSCGGKGP ITAAAFEVDQ DLDVSKLSKE QKQVISEASP 540 GETQGKQGLT LSTRTRTKVQ MQGVAVGRAV DLTSLKGYDN LIDELEKMFE IKGELRPQNK 600 WAVVFTDDEN DMMLMGDDQW LDFCKLVKKI YIYSSDEVQK MNRCKLQNSS LDCEGTVSVD 660 SEHRCET

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence

MEENPKRTPS KHNELPYAVT LRLKSVRAFQ RRRQTRFGGG DLYTELWKLC AGPLVDVPRP  60
GERVFYFPQG HMEQQSEPTS PDPCIPEPSK PTVHSFCKIL TASDTSTHGG FSVLRKHATE  120
CLPPLDMIQA TPTQELNAKD LHGYEWKFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDAF  180
VFLRGDNGEL RVGVRRLARQ QSPMPSSVIS SQSMHLGVLA TASHALMTRT LFVVYYKPRT  240
SQFIIGLNKY LEAINNKFSV GMRFKMRFEG EESPERRFTG TIVGVGDLSS QWSESKWRSL  300
KIQWDEHAAV QRPDRVSPWE IEPFVASAPI HLAQPVVKSK RPRPVEISSS EITTNSPASA  360
FWYHGSTQTV ELNQLGGVPE VQSSSSQVVW PLRQKESNSS SYSSSRVYSE GIWPSSPHVN  420
VSLSLFPDSK EGNKNVTTGS VLSSVASPVS SKASSKPSNT PIPGQVGKDK KSDSSDLWLF  480
GYNLTNNSKT ASPPESEPVC KAMSCGGKGP ITAAAFEVDQ DLDVSKLSKE QKQVISEASP  540
GETQGKQGLT LSTRTRTKVQ MQGVAVGRAV DLTSLKGYDN LIDELEKMFE IKGELRPQNK  600
WAVVFTDDEN DMMLMGDDQW LDFCKLVKKI YIYSSDEVQK MNRCKLQNSS LDCEGTVSVD  660
SEHRCET

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	340	344	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.1	1e-170	ARF family protein