PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1124330.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 244aa MW: 27968.8 Da PI: 9.5654

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1124330.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.5	1.4e-31	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gkl+e+ Pd.00g1124330.m01 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLHEFG 58 79**********************************************95 PP
2	K-box	99.5	4.9e-33	80	170	9	99
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + ++a+s++qe++kLk+++e+L r+qR+llGedL++L++keLq+Le+qLe +l + R++K++l++eq+e+l+kke+ l + nk+Lr kle Pd.00g1124330.m01 80 STGREAQSWYQEVTKLKAKYESLLRTQRQLLGEDLGPLNVKELQNLEKQLEGALAQARQRKTQLMIEQMEDLRKKERHLGDLNKQLRVKLE 170 466789*********************************************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLHEFGSA 60 GMTKTLERYQ HSCFNPEENS TGREAQSWYQ EVTKLKAKYE SLLRTQRQLL GEDLGPLNVK 120 ELQNLEKQLE GALAQARQRK TQLMIEQMED LRKKERHLGD LNKQLRVKLE TEGQNLKAIQ 180 NMWSSNAAAG SSSFSFHSSQ NNPMDCQPHE PFLQIGYHQY LPTEGPSISK SMACETNFIH 240 GWVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	1e-107	MIKC_MADS family protein