PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g1117750.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 189aa MW: 20966.6 Da PI: 6.6182 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.5 | 3.3e-31 | 8 | 109 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C aCk+l+++C+++C++apyf +e+ +f +h +FGas+++++l+ lp +er a ++++eA+ara dP yG+v+ il+lq+q+ + + Pd.00g1117750.m01 8 PCGACKFLKQRCKRGCIFAPYFMHEEaITDFSSIHNVFGASKMSRILSMLPMSERAVASWTMTFEAHARAVDPTYGCVSYILDLQEQVLNIQ 99 7*********************999856**************************************************************** PP DUF260 92 aelallkeel 101 a+l++++e+l Pd.00g1117750.m01 100 AQLDEAHEQL 109 *****99985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence |
MSSRTFNPCG ACKFLKQRCK RGCIFAPYFM HEEAITDFSS IHNVFGASKM SRILSMLPMS 60 ERAVASWTMT FEAHARAVDP TYGCVSYILD LQEQVLNIQA QLDEAHEQLA RAVVPVANPT 120 EQSAVANPTE FESLPQFSFT HTNNVDNKNM NLNYHDDPST SAGKGSNLTE TPSSFLVGEG 180 ARIWAKSKH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 6e-44 | LBD family protein |