PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1117720.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 235aa    MW: 27707.5 Da    PI: 8.0268
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1117720.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF497.8e-161253344
                       --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
             SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                       i n+  r+ tf kR++ i KKA ELS LC+++v++i++  ++
  Pd.00g1117720.m01 12 IPNEGTRKMTFRKRKKSIYKKADELSKLCGIDVCLIVYEADQ 53
                       779999*******************************98776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MVAPRRRSLE LIPNEGTRKM TFRKRKKSIY KKADELSKLC GIDVCLIVYE ADQKKGRAVQ  60
PETWPRDPTQ FKRILNKYKD FKDTSTPGLK RNFDMSDFYE DKKDHVDDDD EKFQNLGKKI  120
FEEEYPTKFQ NLGKKISEEE YPTWDDRIDD FSQDELTKLI ASLESKIQVA TKKIDSMERY  180
MGFNKKQNQC FVREDTNHDE QPAYQVPALM SPPSLVHYPM LPSAWVSRSE LEKSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1527RRRSLELIPNEGTRKMTFRKRKK
22327RKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.17e-22M-type_MADS family protein