PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1116440.m02
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 248aa    MW: 28114.5 Da    PI: 6.6327
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1116440.m02genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.21.9e-131461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W+++Ed +l+ +++++G  +W+  ++  g+ R++k+c++rw +yl
  Pd.00g1116440.m02 14 KGPWSPDEDHKLIAYIQRYGIWNWSQMPKPAGLARSGKSCRLRWVNYL 61
                       79******************99************************97 PP
2Myb_DNA-binding54.92e-1767112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++++eE+e ++++++ +G++ W++Ia+t++ gRt++++k++w+++l
  Pd.00g1116440.m02  67 RGSFSKEEEEAILKLHETMGNR-WSAIAATLP-GRTDNEIKNFWHTHL 112
                        899*******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MVKSQQCEKA AVKKGPWSPD EDHKLIAYIQ RYGIWNWSQM PKPAGLARSG KSCRLRWVNY  60
LRPDIKRGSF SKEEEEAILK LHETMGNRWS AIAATLPGRT DNEIKNFWHT HLKKRFKATE  120
PVQEAQVFND KKKFSETELF LLGEAPKASK LETTSTSSGP VHGDHNKDQI AEQNICASET  180
FGELQSLWAE SHIVRDSEAI FTDPGFTLSN PPTQSWLQEP IFPSGSSYND ASNDYWVNLS  240
MQAEIDGI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-58MYB family protein