PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1108720.m01
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 288aa    MW: 32801.2 Da    PI: 10.4021
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1108720.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.32.7e-1529121186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                        +W+++ + +Liea  e++ +l+ g+l++++Weev++++            +r+ +qCk++ + l+k+yk +k++ ++ + + +s +p+f+ l
  Pd.00g1108720.m01  29 CWSEDATFTLIEAWGERHLSLNHGNLRQKHWEEVADAVnashvtaDNPRSRRTDVQCKNRVDTLKKKYKIEKARVSDSNGDYTSPWPFFSLL 120
                        7*************************************99999966666789************************99999999*****988 PP

           trihelix  86 e 86 
                        +
  Pd.00g1108720.m01 121 D 121
                        6 PP

Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MDFVAGSPSP VTVPRPPSKT ASVPVREDCW SEDATFTLIE AWGERHLSLN HGNLRQKHWE  60
EVADAVNASH VTADNPRSRR TDVQCKNRVD TLKKKYKIEK ARVSDSNGDY TSPWPFFSLL  120
DSLIGSKFPK PSPPLPRRCS PSPPLPRRSP PSPPLQWTFP VARRSATVKR PAPAFFPAPG  180
DEPSEESEGS PSRSSVGGSR MRDRDREVGC VELAMAIERF AEIYERVEQR KQRQMVELEK  240
QRMQFAKDLE YHRMQLFMET TKHQLRKIKR AKRSSSSPGR QLLRGDEV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-65Trihelix family protein