PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1107940.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 360aa MW: 40411.9 Da PI: 6.2905

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1107940.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.3	1.7e-13	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd +++ ++G+ +W++ +++ g++R++k+c++rw +yl Pd.00g1107940.m01 14 RGLWTEEEDAKILAHGSKHGNSNWTAFPKKAGLTRCGKSCRLRWTNYL 61 788*******************************************97 PP
2	Myb_DNA-binding	42.5	1.5e-13	69	110	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T+ E+el+v++++ G++ W Ia+ ++ gRt+k++k++w++ Pd.00g1107940.m01 69 SFTPHEEELIVRLHATIGSR-WPIIAQQLP-GRTDKDVKNYWNT 110 79****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MVRPACCEKL HLKRGLWTEE EDAKILAHGS KHGNSNWTAF PKKAGLTRCG KSCRLRWTNY 60 LRPNLKHESF TPHEEELIVR LHATIGSRWP IIAQQLPGRT DKDVKNYWNT KLKKKLSEMG 120 IDHVTHKPFS QILADYGNIG GLPKAGMRMA IGSLNKDLKN AILMKPELPY SLSTQGFSNI 180 NSHLMPMTMI PIKREPIQDG FLSNAQSSNQ PFDLLIQLQA IRLVTEASNS TNLESSPLNL 240 YIPEGTLSSS PSSSTCSSAA QEQATLQAFS WSDFLLEDAF FPAGDAQEHE DKAEHSSMDM 300 LNQSKAAIPQ SQIEDQAGMQ KYNEVEATSP CDSSFVEAMV ARENEMFLEF PQLMEEPFYY

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MVRPACCEKL HLKRGLWTEE EDAKILAHGS KHGNSNWTAF PKKAGLTRCG KSCRLRWTNY  60
LRPNLKHESF TPHEEELIVR LHATIGSRWP IIAQQLPGRT DKDVKNYWNT KLKKKLSEMG  120
IDHVTHKPFS QILADYGNIG GLPKAGMRMA IGSLNKDLKN AILMKPELPY SLSTQGFSNI  180
NSHLMPMTMI PIKREPIQDG FLSNAQSSNQ PFDLLIQLQA IRLVTEASNS TNLESSPLNL  240
YIPEGTLSSS PSSSTCSSAA QEQATLQAFS WSDFLLEDAF FPAGDAQEHE DKAEHSSMDM  300
LNQSKAAIPQ SQIEDQAGMQ KYNEVEATSP CDSSFVEAMV ARENEMFLEF PQLMEEPFYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28470.1	2e-68	MYB family protein