PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1107000.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family CO-like
Protein Properties Length: 312aa    MW: 35279.2 Da    PI: 7.7809
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1107000.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.36.3e-082064240
           zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                       ++r C+ +++  + l+C+ ++  lC +C  e H+       Ht++
  Pd.00g1107000.m01 20 QKRLCDYCGSSMALLYCRADSAKLCFSCDREVHSAnqlfskHTRS 64
                       7899******99*********************667888888875 PP
2zf-B_box29.71.4e-0965108442
           zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                          C+ ++  ++++fC++ ++ lC++C  e+H +      H+++pl
  Pd.00g1107000.m01  65 LLCDACDGSPASIFCTTESSVLCQNCDWESH-NlssssvHDRRPL 108
                        57*****************************.5588888988775 PP
3CCT63.37.3e-22268310143
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                        Re al+RYkeK+ktR++eK+irYesRK++AesR R+KGrF+k 
  Pd.00g1107000.m01 268 RETALSRYKEKKKTRRYEKHIRYESRKVRAESRTRIKGRFAKM 310
                        99***************************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MNGSSRNEEA EAPQPEREHQ KRLCDYCGSS MALLYCRADS AKLCFSCDRE VHSANQLFSK  60
HTRSLLCDAC DGSPASIFCT TESSVLCQNC DWESHNLSSS SVHDRRPLEG FSGCPCLNEL  120
LTNRNAACGR HKEEIFRQLR VLVKSEPNLF SENVDVKPLK SLASEQNMQR GNLFTGFEHD  180
AEPTVFPAYE AHDFQYNDCG TAEKRESSPK TFIRSYLQEC CVVPDKHSHN DGSASHANDG  240
HGRGGQMNSE ASSAFPKVAA HELSSQNRET ALSRYKEKKK TRRYEKHIRY ESRKVRAESR  300
TRIKGRFAKM DH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.17e-65CO-like family protein