PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1105100.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

M-type_MADS

Protein Properties

Length: 500aa MW: 57164.6 Da PI: 6.2116

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1105100.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	24.7	3e-08	104	143	6	45
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k +r+v+fskRr g++ K + + +ae+ ++++s+ g+ Pd.00g1105100.m01 104 KNRRYVSFSKRRSGLFSKGKDFCKKFEAEIGIVVLSEAGR 143 679**********************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence
MRKMNQSINQ TLESEWKWVP RLVLRRKKGK ATNPIGGSAS ASARCGVDRF TACVFELWGK 60 KSGSREVSIH RNLCPVPPLY KHTNKMKRKA SELTMEEKEV KLYKNRRYVS FSKRRSGLFS 120 KGKDFCKKFE AEIGIVVLSE AGRPYWSPDN PSLDAVLDRF MQSDQAPTNA IDFKVRRQKK 180 EEQGNEVLGQ LAEEVKLCRT VKDMFLLRDK YLVLLQDYTN KGMKGSHVLE KSKAKCVSTS 240 PSNLSFEDSV WVEPISRHKD ICSSSTLKLD SEHDHRLGNN NGVRGGHDDG WFWDEILKDG 300 YTQGVLMEPI SKSEDVLYDS TLNFESDRNV FDTHHGNING GEGSSWCKDW EDGKAQCALM 360 QPILKSEEVL HNSTQNLESN RNVFTDQHGN NNDDDGTFWD RILEYDKTHQ LASSEDVLFN 420 STPNFECDRL NNKNNGGDNN ISFWDKILEE GKSECVSFQP ISESEDFLYN PSLNFESDNR 480 GFDHYQGDNN GGGELCWNYY

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence

MRKMNQSINQ TLESEWKWVP RLVLRRKKGK ATNPIGGSAS ASARCGVDRF TACVFELWGK  60
KSGSREVSIH RNLCPVPPLY KHTNKMKRKA SELTMEEKEV KLYKNRRYVS FSKRRSGLFS  120
KGKDFCKKFE AEIGIVVLSE AGRPYWSPDN PSLDAVLDRF MQSDQAPTNA IDFKVRRQKK  180
EEQGNEVLGQ LAEEVKLCRT VKDMFLLRDK YLVLLQDYTN KGMKGSHVLE KSKAKCVSTS  240
PSNLSFEDSV WVEPISRHKD ICSSSTLKLD SEHDHRLGNN NGVRGGHDDG WFWDEILKDG  300
YTQGVLMEPI SKSEDVLYDS TLNFESDRNV FDTHHGNING GEGSSWCKDW EDGKAQCALM  360
QPILKSEEVL HNSTQNLESN RNVFTDQHGN NNDDDGTFWD RILEYDKTHQ LASSEDVLFN  420
STPNFECDRL NNKNNGGDNN ISFWDKILEE GKSECVSFQP ISESEDFLYN PSLNFESDNR  480
GFDHYQGDNN GGGELCWNYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	1e-11	M-type_MADS family protein