PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g1105090.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 473aa MW: 54474.3 Da PI: 4.6015 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 25.3 | 2e-08 | 10 | 49 | 6 | 45 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k +r+v+fskRr g++ K + + +ae+ ++++s+ g+ Pd.00g1105090.m01 10 KNRRYVSFSKRRSGLFSKGKDFCKKFEAEIGIVVLSEAGR 49 679**********************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence |
MEQKETKQYK NRRYVSFSKR RSGLFSKGKD FCKKFEAEIG IVVLSEAGRP YWSPDNPSLD 60 AVLDRFMETD EAPTNAVDFK VRQQKKRKRE ERDNEVQGQL AEEVKSCRTV KDMFSLRDKY 120 LVLLQDHSNK WMKGSHVLEK GKAKCVSTSP SNLSFEDSVW VEPTSRHKDI CSSSTLKLDN 180 EHDHRLGNNN GVRGSHDDGW FWDEILKDGY TQGVRMEPIS KSEDVLYDST LNFESDRNVF 240 NTHHGNINGG EGSSWCKDWE DGKAQCALMQ PISKSEEDLH NSTQNLESNR NVLTDQHGNN 300 NDDDRTFWDI ILEYDKTHQL ANSEDVLFNS TPNFECDRLN NKNNGGDNNI SFWDKIWEEG 360 KSECVSFQPI SESEDFLYNP SLNFESDNRG FDHYQGDNNS GGELCWNEEW EHGKDDGGCL 420 LDNDLDKIRE VITETNHPSR DPIEHYLVWA GDDNTNNYNY EVDGVSALSG YEK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 6e-12 | M-type_MADS family protein |