PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g110270.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 850aa    MW: 95179.7 Da    PI: 5.8764
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g110270.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.84.1e-23172273199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  Pd.00g110270.m01 172 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSLQPPA-QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 261
                       99*****************************9777666.49************************************************..88 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                       ++ +l+++++r+
  Pd.00g110270.m01 262 EKNQLLLGIRRA 273
                       99999****997 PP
2Auxin_resp84.91.6e-282823471983
        Auxin_resp  19 astseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       as+seFv++++k+ ka+  ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+W+s+k
  Pd.00g110270.m01 282 ASPSEFVIPLSKYIKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWQSVK 347
                       689************986599*****************************************9975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 850 aa     Download sequence    
MEGGVSSIWG SNLGLSRKRD LNFVEHDRER FKVDIDSYID MKLSTSGLGQ QDHEAAGGGA  60
EKKCLNSELW HACAGPLVSL PTPGTRVVYF PQGHSDQVAA TTNKQVDAHI PNYPSLPPQL  120
ICQLHNVTMH ADVETDEVYA QMTLQPLTPQ EQKETFLPME LGIPSKQPTN YFCKTLTASD  180
TSTHGGFSVP RRAAEKVFPP LDFSLQPPAQ ELIARDLHDV EWKFRHIFRG QPKRHLLTTG  240
WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRATRPQTVM PASPSEFVIP LSKYIKAVFH  300
TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWQSVKVGW DESTAGERQP  360
RVSLWEIEPL TTFPMYPSLF PLRLKRPWHP GASSMQDNRD DANSLMWLRG GTGEQGLHSM  420
NFQPVGMFPW MQQRLDSTLI GNDHNPQYQA MLAAGLQNLG SGDQLRQHMM HFQQPFQYVQ  480
QSSSHNPMLQ LQQQIQQSIP HNILQAQPQV SLENLPQHLL QQQFNNQTEE QVQQQQNTYH  540
DALKVQTEQL QQSQQMNVSS PSFPKTDFSD SNTKFSASTT PRQNMLGTLC PEGSGNLLSS  600
SRAGHSMPTE QLPQQSWAPK YAHAQVNAFA NSMSFPPFNE KDNAVEQENC NSDSQNPTLF  660
GVNIESSGLL FPTTAPSFAT SSNDADMSMP LGDSGFQSSL YGCMQDSSEL LHSAGQVDPP  720
TPNCTFVKVY KSGSVGRSLD ISRFSSYHEL REELGQMFGI EGKLEDRLRS GWQLVFVDRE  780
NDVLLLGDDP WESFVNNVWY IKILSPEDVH KMGDQAVEPF SPNTGQRLNS GGGEAQDIVS  840
GLPSLGSLEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0ARF family protein