PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1101000.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 532aa    MW: 59823.9 Da    PI: 4.6162
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1101000.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS363.13.9e-1111545251374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalklfsevsP 89 
                        lv+ Ll+cAeav  +d++la++lL+++   +sp gd++qR+ ++f+ +L++rl+  +  ++  +++  + + +    +e+l a++l+++++P
  Pd.00g1101000.m01 154 LVHMLLACAEAVGCRDTKLAESLLSQIWASVSPWGDSLQRVSSCFAMGLRSRLSLlHNVNINGTFNNDTMDVSLisREEKLEAFQLLNQTTP 245
                        689**************************************************9955666777777666665558789999*********** PP

               GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                        ++ f++++aN+aI +a++g+e +HiiD+++++ lQWp+L+++LasRpegpp +lRiTg+++   ++  ele+  + L + A++lg+p efn+
  Pd.00g1101000.m01 246 YIAFGFMVANEAICQAAQGKENLHIIDLGMEHTLQWPSLIRTLASRPEGPPkKLRITGLVE--DHNVFELEAGMKALVEEASSLGIPTEFNM 335
                        ***********************************************988889********..569************************** PP

               GRAS 181 lvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                        + +  + + l+ e+L++++gEal Vn++++lh+ ++es  + +   ++L+++k+l P+v+++veq+a+hn++ Fl rfle+l++ysa+fdsl
  Pd.00g1101000.m01 336 ISEPvKPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLK---AILQALKKLGPTVLTLVEQDANHNGPFFLGRFLESLHFYSAIFDSL 424
                        744358999**************************88776666...9********************************************* PP

               GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                        ea+lpr+s +r+k+Er+ ++ ei+n+va eg +r++rhe++ +Wr++l++aGF+ + l+   ++qa+++l+ ++ dgy++ +e+g+l+lgWk
  Pd.00g1101000.m01 425 EASLPRNSPQRMKIERQHFADEIRNIVAFEGLNRIKRHERADQWRRQLGRAGFQVMGLK--CTSQARMMLSVYGCDGYTLASEKGCLLLGWK 514
                        *******************************************************9996..679**************************** PP

               GRAS 364 drpLvsvSaWr 374
                        +rp++ +SaW+
  Pd.00g1101000.m01 515 GRPIMLASAWQ 525
                        **********6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    
MEDFNDWLSF PCHESLNHDL AIRRFCPARV EQEQGGEWEE ILNEIEFSSP SETTSPPCLP  60
ASEVDDFVDS FINMDHCRDD DIQSLEKQQS FDYYDQDGME TFSMVDDMYG DVLMMMEGDD  120
MEMGGLAEDF GVGETNMVPS VEEVSHGVDQ GLHLVHMLLA CAEAVGCRDT KLAESLLSQI  180
WASVSPWGDS LQRVSSCFAM GLRSRLSLLH NVNINGTFNN DTMDVSLISR EEKLEAFQLL  240
NQTTPYIAFG FMVANEAICQ AAQGKENLHI IDLGMEHTLQ WPSLIRTLAS RPEGPPKKLR  300
ITGLVEDHNV FELEAGMKAL VEEASSLGIP TEFNMISEPV KPSLLTRENL DLREGEALFV  360
NSIMHLHKYV KESRGSLKAI LQALKKLGPT VLTLVEQDAN HNGPFFLGRF LESLHFYSAI  420
FDSLEASLPR NSPQRMKIER QHFADEIRNI VAFEGLNRIK RHERADQWRR QLGRAGFQVM  480
GLKCTSQARM MLSVYGCDGY TLASEKGCLL LGWKGRPIML ASAWQLHNAS SS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.17e-79GRAS family protein