PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1100310.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 259aa    MW: 29406.5 Da    PI: 8.5399
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1100310.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.21.6e-097296126
                       --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                       +kt+lC++f   G C+yG rC+FaHg
  Pd.00g1100310.m01 72 FKTRLCNNFKM-GNCHYGQRCCFAHG 96
                       79*********.*************8 PP
2zf-CCCH17.95.5e-06130150525
                        --SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                         Cr f+ +G C yGd+C++ H
  Pd.00g1100310.m01 130 MCRLFFNGGKCTYGDKCRYPH 150
                        5*****************977 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MSDSGPTCQF FAPYLESGDN GHQLKPEFPN ADKDFKDHSD IESHPFKKSK TSEVLLISTI  60
PMAQNKMLPC NFKTRLCNNF KMGNCHYGQR CCFAHGISDL RKTWRNCQGL ETEEGFKART  120
CGHRRTSNDM CRLFFNGGKC TYGDKCRYPH HVTPENIREK SAISISTTQL TLVVLVNFTA  180
KELMKLCGYM AVESRSVQNS RTSTSMSKLR VGIGATYHKQ VQGVECNFKW NELEKMSRIY  240
ADWIEDIPLV HGSSSKAEC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35430.11e-10C3H family protein