PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1095590.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 416aa MW: 45919 Da PI: 8.0265

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1095590.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.8	2.1e-17	139	184	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+q+G+ +W++Ia+++ gR++k+c++rw++ Pd.00g1095590.m01 139 RGHWRPAEDSKLKELVAQYGPQNWNLIAEHLD-GRSGKSCRLRWFNQ 184 899***************************.*********996 PP
2	Myb_DNA-binding	55.9	9.7e-18	191	234	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ Pd.00g1095590.m01 191 RRAFSEEEEERLLAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 234 678*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MAPQHLKSDC VGFTRYEDLN FLPPPPVSHQ LSLSNTFREM VHPHFYSGGQ DHSGTSSEMG 60 FEPFSPSSSQ QSKKPWGFQP LENGGTRITD HGDQYPVLFG IDQKKGMPLS LAGEEADEGR 120 NLAAAGRTGT GGHTKSCARG HWRPAEDSKL KELVAQYGPQ NWNLIAEHLD GRSGKSCRLR 180 WFNQLDPRIN RRAFSEEEEE RLLAAHRLYG NKWAMIARLF PGRTDNAVKN HWHVIMARKH 240 REQSHVYKRR KPSSPQAIQL PKEFDHPPVT NFQKNTSSTE STVSISTIDD TQSASTCTEL 300 SLTPSTRLPL SFFSKLHPFQ RHQNFGSQMG SSSDGGSGKI IGNGNGLCKT GPLGGAMMGV 360 DQSGHQSDSN SEISGDESVT TTRTNVSLSG ESQNQNLNNN EKISMHFIDF LGVGMG

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MAPQHLKSDC VGFTRYEDLN FLPPPPVSHQ LSLSNTFREM VHPHFYSGGQ DHSGTSSEMG  60
FEPFSPSSSQ QSKKPWGFQP LENGGTRITD HGDQYPVLFG IDQKKGMPLS LAGEEADEGR  120
NLAAAGRTGT GGHTKSCARG HWRPAEDSKL KELVAQYGPQ NWNLIAEHLD GRSGKSCRLR  180
WFNQLDPRIN RRAFSEEEEE RLLAAHRLYG NKWAMIARLF PGRTDNAVKN HWHVIMARKH  240
REQSHVYKRR KPSSPQAIQL PKEFDHPPVT NFQKNTSSTE STVSISTIDD TQSASTCTEL  300
SLTPSTRLPL SFFSKLHPFQ RHQNFGSQMG SSSDGGSGKI IGNGNGLCKT GPLGGAMMGV  360
DQSGHQSDSN SEISGDESVT TTRTNVSLSG ESQNQNLNNN EKISMHFIDF LGVGMG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	6e-67	MYB family protein