PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1092320.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 208aa    MW: 23181.9 Da    PI: 8.9933
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1092320.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF633.3e-201563149
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       k+ien+  r +tfskRr gi KKA+EL  LC+aev v++fs++gk y y
  Pd.00g1092320.m01 15 KKIENEDDRLITFSKRRSGIYKKASELAALCGAEVGVVVFSPKGKPYSY 63
                       68*******************************************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    
MEGKRTRGRQ KIDIKKIENE DDRLITFSKR RSGIYKKASE LAALCGAEVG VVVFSPKGKP  60
YSYGSPTIEY VANRFLNAVA DQNADERISH GILEVYRQAR VYEANENHNE LVGQLEAVKE  120
RSKVLQQLVG ERGSGEQQYW WEPALHNQDS QGVKKIHESF KGLVNHVCTH LRLRYGSGSD  180
NFDNGIASSS AALPFHAAVG SNPNSQSH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.15e-39M-type_MADS family protein