PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1090700.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 1164aa MW: 129001 Da PI: 6.153

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1090700.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.4	2.2e-07	557	579	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G+C GdrC F+Hgp Pd.00g1090700.m01 557 VPCIFFQK-GQCLKGDRCAFSHGP 579 69****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 1164 aa Download sequence
MDYERIQKPQ GGGGFSPGKL RTMLLGVEKK RKEKEDPESK FALRSQPADF DEAGGGGSDN 60 CKDVDVVSVL PECSTSTAAD SVGSEMLSDR RLKDNTSVNS RVRNQEDPSL DYDSGHDALS 120 VSSSIFEFQK AERAPQRVPL APFSKPAPSK WDDAQKWIAS PTWNRPKMGQ AQMQGGQGVG 180 SRKVGNFGYG SRQPTTKVVV EVPDQKVAIF EEPDTKRIDT NQAKMESGGK KFVSWESDPY 240 PIADSYGKPV LMIENSVGES AINLSQHDAS AALHGTTTFI PPPSTARSVS MRDMGTEMTP 300 IASQEPSRTG TPVGATTPIR SPTNSRPSTP GRAAPASSLI DQEANKELSE KELQMKTRRE 360 IMALGTQLGK MNIAAWASKE EDKDASTSLR TVPAEQPGKN VIETRAAAWE EAEKAKYIAR 420 FKREELKIQA WENHQKAKTE AEMRKIEVEV ERIRGRAHKE ALKRNTDCVY FLASPLTCKK 480 GSECEYRHSE YARVNPRDCW YWLNGNCLNL KCAFRHPPLD GLLGSPAATS AGPSLPLSHT 540 VATPTTHATY NSSKQAVPCI FFQKGQCLKG DRCAFSHGPN PMTGSKVPQA PATTHGTEPS 600 SLKKVFGGLQ KCTQELKVPQ ASASKSVGVP PQAKPAPKFQ TVPVRNGVSI ERNVPSTKAL 660 DDEARRYKAT SVPPVSNGDS TSQANHLLQA HVSDHHGYQN GKDADEHLRE SSPGFDVLVD 720 DELGDSDYYH GEDQFGRTRG HEGRNLNSVN EYDLDRPADY NSMADVDRER FCDPRGYDPY 780 DHMQGQYAWD QHRASSERQL VGPARLERRG YRKSDSPENI DELDLRHRLS KHRRVNGLRS 840 IVSHDYALDG HVEERKNRPR RDSQQLPSHE GSLSSRLHGR IKLPGGSPPV NGGDLHQERE 900 VDRGRSRGRL SPRRAPISSQ QGRLRDRIKG RVEDYNNEER NFGAHRSRRE IMDDRSDDFS 960 RPKRLSDLKG GKDGENKEQS YLGKRKNVMD NYQQSEGDIS FEGPKPLSEI LKRKREAEAA 1020 ASGSGKSFVN KQGNNQRESR VSNPGDSEFA VAEVKSSLPT VAKEEPKYAT EDAVGAEDEK 1080 TDVAHGQSSQ GHNAGELEEG MIDDEPLEDQ EPEAEDQREG DYDYEQGEDG DYNYEEGENA 1140 DGEEEYMEDE DGDDFAKKIG VMFS

Sequence ? help Back to Top

Protein Sequence Length: 1164 aa Download sequence

MDYERIQKPQ GGGGFSPGKL RTMLLGVEKK RKEKEDPESK FALRSQPADF DEAGGGGSDN  60
CKDVDVVSVL PECSTSTAAD SVGSEMLSDR RLKDNTSVNS RVRNQEDPSL DYDSGHDALS  120
VSSSIFEFQK AERAPQRVPL APFSKPAPSK WDDAQKWIAS PTWNRPKMGQ AQMQGGQGVG  180
SRKVGNFGYG SRQPTTKVVV EVPDQKVAIF EEPDTKRIDT NQAKMESGGK KFVSWESDPY  240
PIADSYGKPV LMIENSVGES AINLSQHDAS AALHGTTTFI PPPSTARSVS MRDMGTEMTP  300
IASQEPSRTG TPVGATTPIR SPTNSRPSTP GRAAPASSLI DQEANKELSE KELQMKTRRE  360
IMALGTQLGK MNIAAWASKE EDKDASTSLR TVPAEQPGKN VIETRAAAWE EAEKAKYIAR  420
FKREELKIQA WENHQKAKTE AEMRKIEVEV ERIRGRAHKE ALKRNTDCVY FLASPLTCKK  480
GSECEYRHSE YARVNPRDCW YWLNGNCLNL KCAFRHPPLD GLLGSPAATS AGPSLPLSHT  540
VATPTTHATY NSSKQAVPCI FFQKGQCLKG DRCAFSHGPN PMTGSKVPQA PATTHGTEPS  600
SLKKVFGGLQ KCTQELKVPQ ASASKSVGVP PQAKPAPKFQ TVPVRNGVSI ERNVPSTKAL  660
DDEARRYKAT SVPPVSNGDS TSQANHLLQA HVSDHHGYQN GKDADEHLRE SSPGFDVLVD  720
DELGDSDYYH GEDQFGRTRG HEGRNLNSVN EYDLDRPADY NSMADVDRER FCDPRGYDPY  780
DHMQGQYAWD QHRASSERQL VGPARLERRG YRKSDSPENI DELDLRHRLS KHRRVNGLRS  840
IVSHDYALDG HVEERKNRPR RDSQQLPSHE GSLSSRLHGR IKLPGGSPPV NGGDLHQERE  900
VDRGRSRGRL SPRRAPISSQ QGRLRDRIKG RVEDYNNEER NFGAHRSRRE IMDDRSDDFS  960
RPKRLSDLKG GKDGENKEQS YLGKRKNVMD NYQQSEGDIS FEGPKPLSEI LKRKREAEAA  1020
ASGSGKSFVN KQGNNQRESR VSNPGDSEFA VAEVKSSLPT VAKEEPKYAT EDAVGAEDEK  1080
TDVAHGQSSQ GHNAGELEEG MIDDEPLEDQ EPEAEDQREG DYDYEQGEDG DYNYEEGENA  1140
DGEEEYMEDE DGDDFAKKIG VMFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	855	862	RKNRPRRD