PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1084820.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 686aa MW: 76168.5 Da PI: 6.5127

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1084820.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18	5.1e-06	91	115	5	26
--SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 5 lCrffartG...tCkyGdrCkFaHg 26 +C+ a+ G C+y d+C+F+H+ Pd.00g1084820.m01 91 ICPEVAKRGdvsRCPYNDKCRFSHD 115 699999999999************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 686 aa Download sequence
MDESPAETAP VPEVSNGWAD RTPEELVAKS IAPVKKQFLC PPPIRTCSNE QNDAVSGGKT 60 KPAQTSVVKE KKSKRQLKRE RQQAVKSAVG ICPEVAKRGD VSRCPYNDKC RFSHDIEAYK 120 AQKPEDIEGD CPFMTAQETC PYGLACRFLG SHKDGVEAGD VNAHRRSSEM NGLRKDVQKL 180 LWKNKVKFPK ADAKLKALGL LGHANSKIKI LENKKDDQVV SNNCHVTDGN GCTELPNNSD 240 DKMELAAEIR EENGVDETFS LDESRPSKKP RSVIEEEILS GEVDDGGANA TAEVVEPSCT 300 SPEPEVTADI VSPESDRSLK LHPREKKLID FREKLYLAPL TTVGNLPFRR VCKGLGADIT 360 CGEMAMCTNL LQGQASEWAL LRRHSSEDLF GVQICGAYPD TVARTVELVN QECTVDFIDI 420 NMGCPIDIVV NKGAGSALLT KPMRMKGIVQ AASGTVDCPI TIKVRTAYFE GKNRIDSLIA 480 DMGNWGASAV TIHGRSRQQR YSKLADWEYV YQCARKAPDA LPVLGNGDIF SYLDWNKHQA 540 ECPELSTSMI ARGALVKPWI FTEIKEQRHW DISSGERLNI LKDYVRLGLE HWGSDTKGVE 600 TTRRFLLEWL SYTCRYVPVG LLEVIPQRLS WRPPSYFGRD DLETLMASDS AADWVRISEM 660 LLGKVPDGFT FAPKHKSNSY DRAENG

Sequence ? help Back to Top

Protein Sequence Length: 686 aa Download sequence

MDESPAETAP VPEVSNGWAD RTPEELVAKS IAPVKKQFLC PPPIRTCSNE QNDAVSGGKT  60
KPAQTSVVKE KKSKRQLKRE RQQAVKSAVG ICPEVAKRGD VSRCPYNDKC RFSHDIEAYK  120
AQKPEDIEGD CPFMTAQETC PYGLACRFLG SHKDGVEAGD VNAHRRSSEM NGLRKDVQKL  180
LWKNKVKFPK ADAKLKALGL LGHANSKIKI LENKKDDQVV SNNCHVTDGN GCTELPNNSD  240
DKMELAAEIR EENGVDETFS LDESRPSKKP RSVIEEEILS GEVDDGGANA TAEVVEPSCT  300
SPEPEVTADI VSPESDRSLK LHPREKKLID FREKLYLAPL TTVGNLPFRR VCKGLGADIT  360
CGEMAMCTNL LQGQASEWAL LRRHSSEDLF GVQICGAYPD TVARTVELVN QECTVDFIDI  420
NMGCPIDIVV NKGAGSALLT KPMRMKGIVQ AASGTVDCPI TIKVRTAYFE GKNRIDSLIA  480
DMGNWGASAV TIHGRSRQQR YSKLADWEYV YQCARKAPDA LPVLGNGDIF SYLDWNKHQA  540
ECPELSTSMI ARGALVKPWI FTEIKEQRHW DISSGERLNI LKDYVRLGLE HWGSDTKGVE  600
TTRRFLLEWL SYTCRYVPVG LLEVIPQRLS WRPPSYFGRD DLETLMASDS AADWVRISEM  660
LLGKVPDGFT FAPKHKSNSY DRAENG