PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1083020.m02
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family YABBY
Protein Properties Length: 234aa    MW: 26130.6 Da    PI: 8.1031
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1083020.m02genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2436.2e-75221942170
              YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee...lleelkveeenlksnvekee 90 
                        ++ s s+q+Cyv+CnfC+t+lavsvP +slfk+vtvrCGhC++llsvn++      + ++hl + + ++   lle+++++ ++ + ++++ +
  Pd.00g1083020.m02  22 HLLSPSDQLCYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCSNLLSVNMRALLLPPPNNQHLPHPFFNTphnLLEDMRNAPSSNTLMNHQPN 113
                        56789**********************************************99999******999877645678888888777777766666 PP

              YABBY  91 sastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                         +++s+ + +    +++e+p++p  v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl
  Pd.00g1083020.m02 114 YPNESIMAIRGGGLDHQEIPKPPAaVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 194
                        666666666667888999**999889*****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MSSAAASSTA FNSPDQQQQQ QHLLSPSDQL CYVHCNFCDT VLAVSVPCSS LFKTVTVRCG  60
HCSNLLSVNM RALLLPPPNN QHLPHPFFNT PHNLLEDMRN APSSNTLMNH QPNYPNESIM  120
AIRGGGLDHQ EIPKPPAAVN RPPEKRQRVP SAYNRFIKDE IQRIKAGNPD ISHREAFSAA  180
AKNWAHFPHI HFGLMPDQPV KKTNMRQQEG EDMLMKDGFF STPANGNILE SRTC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.19e-79YABBY family protein