PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1077920.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GRAS

Protein Properties

Length: 411aa MW: 45076.4 Da PI: 4.3843

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1077920.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	52.2	1.2e-16	327	409	3	94
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 +lL++cA+av+s d + a++ L ++++++sp+gd +qRla+y++++L+ rla l+p e++ ++ l a++++ ++P+ k++ Pd.00g1077920.m01 327 TLLTQCAQAVASYDIRTANEQLRQIRQHSSPYGDGTQRLAHYLANGLELRLAA-----GVPLNP----EMSAADLLRAYQTYITACPFQKIG 409 69************************************************9.....222333....34579*************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MDTFLDEIPS SMNKFMFDQG SVPAYSNQNI GTEFEADHDF TDPSFFLVNP DPSSDFSSLS 60 GFSSEVDSPD SQSSNAILKY ISEMLMEEEL ENKPCMLQDC LALQAAEKSL HDVLVQDYPS 120 SANSLLTSVY QNVENPDEGS NHSSNGSVAA SNWVGSDWDC VQDVFQSSHI QISATESPAY 180 TLSVPNPLLS NGQGEIIAVE SSSSFPIEPR ELAKDVSFNS VQDGSSSPRG SRSKKNRQRE 240 DGDDPDEGRS NKQSAVYADE SELPELFDKV LLRQGEKQES QSCSPQESEH KEGSGKLQLN 300 RKSRGSKGKK TRKKKPDDNT GGVDLWTLLT QCAQAVASYD IRTANEQLRQ IRQHSSPYGD 360 GTQRLAHYLA NGLELRLAAG VPLNPEMSAA DLLRAYQTYI TACPFQKIGL A

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MDTFLDEIPS SMNKFMFDQG SVPAYSNQNI GTEFEADHDF TDPSFFLVNP DPSSDFSSLS  60
GFSSEVDSPD SQSSNAILKY ISEMLMEEEL ENKPCMLQDC LALQAAEKSL HDVLVQDYPS  120
SANSLLTSVY QNVENPDEGS NHSSNGSVAA SNWVGSDWDC VQDVFQSSHI QISATESPAY  180
TLSVPNPLLS NGQGEIIAVE SSSSFPIEPR ELAKDVSFNS VQDGSSSPRG SRSKKNRQRE  240
DGDDPDEGRS NKQSAVYADE SELPELFDKV LLRQGEKQES QSCSPQESEH KEGSGKLQLN  300
RKSRGSKGKK TRKKKPDDNT GGVDLWTLLT QCAQAVASYD IRTANEQLRQ IRQHSSPYGD  360
GTQRLAHYLA NGLELRLAAG VPLNPEMSAA DLLRAYQTYI TACPFQKIGL A

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	301	316	RKSRGSKGKKTRKKKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-43	GRAS family protein