PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1077890.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 694aa    MW: 78026.8 Da    PI: 6.1552
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1077890.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS380.81.7e-1163216902372
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         +lL+ecA+av s d++ a++lL+++++++sp+g ++qR+a+yf+e+L+arla+  s  y+ l   +ts   ++e l+a+++++ ++P+ k+
  Pd.00g1077890.m01 321 CKLLTECAQAVGSYDQQSASELLKQIRQHSSPYGYATQRVAHYFAEGLEARLAGARSLSYAPLLIMHTS---TTEILKAYQVYVSACPFKKM 409
                        589***************************************************888888888888887...89****************** PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                         h+ aN++I++ +e+++r+HiiDf+is+GlQWp+L+q+L+++++gpp+lRiT+++ p++g   +e++eetg+rLak+ ++ gvpfe+nv +a
  Pd.00g1077890.m01 410 LHFFANRTIMKQTEKATRLHIIDFGISYGLQWPCLIQSLSEKTGGPPNLRITAIEFPQPGfrPAERIEETGRRLAKYSKRYGVPFEYNV-IA 500
                        ***********************************************************9****************************9.7* PP

               GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                        k++e+++leeL+++++E+++Vn++++l++++de+v ++++rd+vL+l+k+++P+++ +   +  +n++ F++rf + l ++ alfd++ea++
  Pd.00g1077890.m01 501 KKWETIRLEELQIDRNEVIVVNCMHRLKQIPDETVMMNNPRDAVLNLIKRINPDLFMHGVVNGTYNAPAFVTRFKQLLFHFHALFDMYEATV 592
                        ******************************************************************************************** PP

               GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrp 366
                        pr++e+r   Er+++gr+i+nv+aceg er+er et+++W++r  +aGFk++pl+ + +k++k++ ++++  + + +e++ +++++gWk+r 
  Pd.00g1077890.m01 593 PRDDEHRLLFERAIFGRDIMNVIACEGLERVERPETYKQWQARYVRAGFKQLPLDRELVKKVKTMSKMMGyHKDFGIEDDGEWMLQGWKGRI 684
                        *********************************************************************99999****************** PP

               GRAS 367 LvsvSa 372
                        +v++Sa
  Pd.00g1077890.m01 685 IVALSA 690
                        ****98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    
MEELNFGHGS NSVSSDQNLV NGLQVNHEPT NKLLLPANLD RLSDSGTSSE GDTVDSSDCN  60
LPVLKYISDI LLEEDLEGKP CMLEDILGLQ AAEKSFYDAL NQKDPPLPNQ PSFSVYQSFE  120
NSDGGFQSSN GSISGFQSSN GSIAAKTGSV WDFSETSHVQ TSLVEFLSDT TLVSDSFSDT  180
QSLGNFRGVG EGNEIIDLEG YQCTPPGPNT LYRNLASVPE NYGYNSTNGS KGKKNHQREE  240
GHYTEEGRSN KQSAAFADDS DLQEMFDKVL QGVNPESESC FHDESLNAEG TRKLQHNKQS  300
KGSKTTCSKK PNSNRQVVDL CKLLTECAQA VGSYDQQSAS ELLKQIRQHS SPYGYATQRV  360
AHYFAEGLEA RLAGARSLSY APLLIMHTST TEILKAYQVY VSACPFKKML HFFANRTIMK  420
QTEKATRLHI IDFGISYGLQ WPCLIQSLSE KTGGPPNLRI TAIEFPQPGF RPAERIEETG  480
RRLAKYSKRY GVPFEYNVIA KKWETIRLEE LQIDRNEVIV VNCMHRLKQI PDETVMMNNP  540
RDAVLNLIKR INPDLFMHGV VNGTYNAPAF VTRFKQLLFH FHALFDMYEA TVPRDDEHRL  600
LFERAIFGRD IMNVIACEGL ERVERPETYK QWQARYVRAG FKQLPLDREL VKKVKTMSKM  660
MGYHKDFGIE DDGEWMLQGW KGRIIVALSA LKPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein