PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g107360.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 244aa    MW: 28362.7 Da    PI: 6.1838
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g107360.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.21e-2671162191
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                       +fY+ Y++++GF++r++++++s +++ i+ r+fvCskeg+r+e+    +++r   +r+ tr gC+a+l+++ ++ gkw+++ +++eHnHel+p
  Pd.00g107360.m01  71 DFYEMYGRHMGFTIRNNRTRRSLKDNAIIGREFVCSKEGFRAEKYAM-SQNRVlpSRPATRKGCNAMLRITAKDGGKWVIYGFVKEHNHELNP 162
                       6*********************9********************9887.33333459**********************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MASTSGQGFS PERNYRCWLD ETFSSHETAD DELSYTPDVD NNLIETSSQD FSLSLEPVIG  60
MEFESAEDAR DFYEMYGRHM GFTIRNNRTR RSLKDNAIIG REFVCSKEGF RAEKYAMSQN  120
RVLPSRPATR KGCNAMLRIT AKDGGKWVIY GFVKEHNHEL NPNKIPPRRS HRIAFCEDEK  180
DLKIRELSTE LHREKKKSAA YQEKLQIVLK YIEEHTQRLS LKVELATNNM RELESEEQDS  240
SYSD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.14e-47FAR1 family protein