PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1067090.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 1198aa MW: 132772 Da PI: 6.3354

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1067090.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	591	613	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G+C GdrC F+Hgp Pd.00g1067090.m01 591 VPCIFFQK-GQCLKGDRCAFSHGP 613 69****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 1198 aa Download sequence
MDYERIQKPQ GGGGFSPGKL RTMLLGVEKK RKEKEDPESK FALRSQPADF DEAGGGGSDN 60 CKDVDVVSVL PECSTSTAAD SVGSEMLSDR GLKDNTSVNS RVRNQEDPSL DYDSGHDALS 120 VSSSIFEFQK AERAPQRVPL APFSKPAPSK WDDAQKWIAS PTWNRPKMGQ AQMQGGQGVG 180 SRKVGNFGYG SRQPTTKVVV EVPDQKVAIF EEPDTKRIDT NQAKMESGGK KFVSWESDPY 240 PIADSYGKPV LMIENSVGES AINLSQHDAS VALHGTTTFI PPPSTARSVS MRDMGTEMTP 300 IASQEPSRTG TPVGATTPIR SPTNSRPSTP GRAAPDSSLI HQEANKELSE KELQMKTRRE 360 IMALGTQLGK MNIAAWASKE EDKDASTSLR TVPAEQPGKN VIETRAAAWE EAEKAKYIAR 420 FKREELKIQA WENHQKAKTE AEMRKIEVEV ERIRGRAHKK GNVGLSHPCL TNLKSDKRKK 480 NNFHQGWRED SSRFTASQMP ADNNVLPDFH SGSECEYRHS EYARVNPRDC WYWLNGNCLN 540 LKCAFRHPPL DGLLGSPAAT SAGPSLPLSH AVATPTTPAT HATYNSSKQA VPCIFFQKGQ 600 CLKGDRCAFS HGPNPMTGSK VPQAPATTHG TEPSSLKKVF GGLQKCTQEL KVPQASASKS 660 VGVPPQAKPA PKFQTVPLRN GVSIERNVPS TKALDDEARR YKATSVPPVS NGDSTSQANH 720 LLQAHVSDHH GYQNGKDADE HLRESSPGFD VLVDDELGDS DYYHGEDQFG RTRGHEGRNL 780 NSVNEYDLDR PADYNSMADV DRERFCDPRG YDPYDHMQGQ YAWDQHRASS ERQLVGPARL 840 ERRGYRKSDS PENIDELDLR HRLSKHRRVN GLRSIVSHDY ALDGHVEERK NRPRRDSQQL 900 PSHEGSLSSR LHGRIKLPGG SPPVNGGDLH QEREVDRGRS RGRLSPRRAP ISSQQGRLRD 960 RIKGRVEDYN NEERNFGAHR SRREIMDDRS DDFSRPKRLS DLKGGKDGEN KEQSYLGKRK 1020 NVMDNYQQSE GNISFEGPKP LSEILKRKRE AEAAASGSGK SFVNKQGNNQ RESRVSNPGD 1080 SEFAVAEVKS SLPTVAKEEP KYANEDAVGA EDEKTDVAHG QSSQGHNAGE LEEGMIDDEP 1140 LEDQEPEAED QREGDYDYEQ GEDGDYNYEE GENADGEEEY MEDEDGDDFA KKIGVMFS

Sequence ? help Back to Top

Protein Sequence Length: 1198 aa Download sequence

MDYERIQKPQ GGGGFSPGKL RTMLLGVEKK RKEKEDPESK FALRSQPADF DEAGGGGSDN  60
CKDVDVVSVL PECSTSTAAD SVGSEMLSDR GLKDNTSVNS RVRNQEDPSL DYDSGHDALS  120
VSSSIFEFQK AERAPQRVPL APFSKPAPSK WDDAQKWIAS PTWNRPKMGQ AQMQGGQGVG  180
SRKVGNFGYG SRQPTTKVVV EVPDQKVAIF EEPDTKRIDT NQAKMESGGK KFVSWESDPY  240
PIADSYGKPV LMIENSVGES AINLSQHDAS VALHGTTTFI PPPSTARSVS MRDMGTEMTP  300
IASQEPSRTG TPVGATTPIR SPTNSRPSTP GRAAPDSSLI HQEANKELSE KELQMKTRRE  360
IMALGTQLGK MNIAAWASKE EDKDASTSLR TVPAEQPGKN VIETRAAAWE EAEKAKYIAR  420
FKREELKIQA WENHQKAKTE AEMRKIEVEV ERIRGRAHKK GNVGLSHPCL TNLKSDKRKK  480
NNFHQGWRED SSRFTASQMP ADNNVLPDFH SGSECEYRHS EYARVNPRDC WYWLNGNCLN  540
LKCAFRHPPL DGLLGSPAAT SAGPSLPLSH AVATPTTPAT HATYNSSKQA VPCIFFQKGQ  600
CLKGDRCAFS HGPNPMTGSK VPQAPATTHG TEPSSLKKVF GGLQKCTQEL KVPQASASKS  660
VGVPPQAKPA PKFQTVPLRN GVSIERNVPS TKALDDEARR YKATSVPPVS NGDSTSQANH  720
LLQAHVSDHH GYQNGKDADE HLRESSPGFD VLVDDELGDS DYYHGEDQFG RTRGHEGRNL  780
NSVNEYDLDR PADYNSMADV DRERFCDPRG YDPYDHMQGQ YAWDQHRASS ERQLVGPARL  840
ERRGYRKSDS PENIDELDLR HRLSKHRRVN GLRSIVSHDY ALDGHVEERK NRPRRDSQQL  900
PSHEGSLSSR LHGRIKLPGG SPPVNGGDLH QEREVDRGRS RGRLSPRRAP ISSQQGRLRD  960
RIKGRVEDYN NEERNFGAHR SRREIMDDRS DDFSRPKRLS DLKGGKDGEN KEQSYLGKRK  1020
NVMDNYQQSE GNISFEGPKP LSEILKRKRE AEAAASGSGK SFVNKQGNNQ RESRVSNPGD  1080
SEFAVAEVKS SLPTVAKEEP KYANEDAVGA EDEKTDVAHG QSSQGHNAGE LEEGMIDDEP  1140
LEDQEPEAED QREGDYDYEQ GEDGDYNYEE GENADGEEEY MEDEDGDDFA KKIGVMFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	889	896	RKNRPRRD