PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1062230.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 167aa    MW: 18693.4 Da    PI: 6.7689
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1062230.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260143.37.2e-4561051100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l+ 
  Pd.00g1062230.m01   6 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARMRDPVYGCVGAISYLQNQVSELQM 97 
                        7******************************************************************************************* PP

             DUF260  93 elallkee 100
                        +la++++e
  Pd.00g1062230.m01  98 QLAVAQAE 105
                        ***99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    
MVGTSPCASC KLLRRRCAKD CIFAPYFPSD DPHKFAIVHK VFGASNVSKM LQELPVHQRA  60
DAVSSLVYEA NARMRDPVYG CVGAISYLQN QVSELQMQLA VAQAEILCIQ MQHEPTVPTP  120
QQILDTDEKS YFLPNNFPQY LNFPSSSSNV IHDSLKRESI FGHDMVS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.15e-81LBD family protein