PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1059210.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 586aa MW: 64871.8 Da PI: 6.8579

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1059210.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94.9	3.7e-30	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +rienk+nrqvtfskRrng+lKKA+ELSvLCda+va+ii ss+gklye+ Pd.00g1059210.m01 9 ERIENKINRQVTFSKRRNGLLKKAYELSVLCDAQVALIISSSRGKLYEFG 58 69**********************************************95 PP
2	K-box	89.1	8.2e-30	79	171	8	100
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++e+++++l+qe++kLk ++e+Lq +qRhllGedLe+L lkeL +Le+qL+k l+k R++K+e++++ +eel++ke++l e+nk+L+++le Pd.00g1059210.m01 79 NVAENETQNLYQEVSKLKVKYESLQLSQRHLLGEDLEKLRLKELVNLENQLDKTLSKARQRKTEMMYDRLEELRQKENDLGEKNKQLKSELE 170 38999************************************************************************************998 PP K-box 100 e 100 e Pd.00g1059210.m01 171 E 171 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 586 aa Download sequence
MGRGRVVLER IENKINRQVT FSKRRNGLLK KAYELSVLCD AQVALIISSS RGKLYEFGST 60 DVNKILERYR QCCYSLQGNV AENETQNLYQ EVSKLKVKYE SLQLSQRHLL GEDLEKLRLK 120 ELVNLENQLD KTLSKARQRK TEMMYDRLEE LRQKENDLGE KNKQLKSELE EEGHAQATLQ 180 GPGELPLTKV NRIESEHPSL RLQIWDHQPV PQEKAADDDQ GRTMVGGSKS NCNQRAVDKK 240 LVLGEDSKDP SSDAKGGSKD DKSLVVCFGE MLIDFVPTVG GVSLAEAPAF KKAPGGAPAN 300 VAVGVSRLGG SSGFIGKVGN DEFGYMLADI LKQNNVNNSG VRFDPSARTA LAFVTLRADG 360 EREFLFFRNP SADMLLRESE LDINLIQQAR IFHYGSISLI DEPCRSTHLA AMRIAKKSGC 420 ILSYDPNLRL PLWPSEEAAR KGIMSIWDQA DIIKISEDEI TFLTGGDDPY DDNVVLTKLF 480 HPNLKLLVVT EGSEGCRYYT QKFRGRVAGV KVKPVDTTGA GDAFVSGVLN SIASDLSLFQ 540 NEQGLREALL FANACGALTV TERGAIPAMP TREAVLRCLA QVADKN

Sequence ? help Back to Top

Protein Sequence Length: 586 aa Download sequence

MGRGRVVLER IENKINRQVT FSKRRNGLLK KAYELSVLCD AQVALIISSS RGKLYEFGST  60
DVNKILERYR QCCYSLQGNV AENETQNLYQ EVSKLKVKYE SLQLSQRHLL GEDLEKLRLK  120
ELVNLENQLD KTLSKARQRK TEMMYDRLEE LRQKENDLGE KNKQLKSELE EEGHAQATLQ  180
GPGELPLTKV NRIESEHPSL RLQIWDHQPV PQEKAADDDQ GRTMVGGSKS NCNQRAVDKK  240
LVLGEDSKDP SSDAKGGSKD DKSLVVCFGE MLIDFVPTVG GVSLAEAPAF KKAPGGAPAN  300
VAVGVSRLGG SSGFIGKVGN DEFGYMLADI LKQNNVNNSG VRFDPSARTA LAFVTLRADG  360
EREFLFFRNP SADMLLRESE LDINLIQQAR IFHYGSISLI DEPCRSTHLA AMRIAKKSGC  420
ILSYDPNLRL PLWPSEEAAR KGIMSIWDQA DIIKISEDEI TFLTGGDDPY DDNVVLTKLF  480
HPNLKLLVVT EGSEGCRYYT QKFRGRVAGV KVKPVDTTGA GDAFVSGVLN SIASDLSLFQ  540
NEQGLREALL FANACGALTV TERGAIPAMP TREAVLRCLA QVADKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	3e-67	MIKC_MADS family protein