PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1058990.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 475aa MW: 55066.4 Da PI: 10.7535

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1058990.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	61.5	2.2e-19	5	52	1	48
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllka 48 +CaaCk+lrr+C++dC++ pyfp ++p++fa vh+++Gasnv k+l+ Pd.00g1058990.m01 5 RCAACKYLRRRCPSDCIFFPYFPPNNPERFASVHRIYGASNVAKMLQG 52 6********************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MISGRCAACK YLRRRCPSDC IFFPYFPPNN PERFASVHRI YGASNVAKML QGPFQQYPKR 60 CFLVLFITLT RASVRSNQRN ITHFPQIARV RGSVAFISSS VKEKKMRPIF CGNFEYDARQ 120 NELERLFGRY GKVDRVDMKS GFAFIYMEDE RDAEYAIRGL DRKEFGRKGR RLRVEWTKVA 180 NHERGTRRPG ASRRSSTNTR PSKTLFVINF DPYHTRTKDL ERHFDPYGKI VSVRIRRNFA 240 FVQYESQEDA TRALEATNMS KLMDRVISVE YAVRDDDERR DGFSPDRRSR DRSLDRGRDR 300 RRSPSPYKRE RGSPDYGRGP SPGPYRRERG SPDYGRGPSP YRRERVSPDY GRGRSPSPYR 360 RERSDHGRIS SRSPRKERRV RDSPENGAIE SPYKRDRGSP ENGAIQSPYK RDRSSPENGR 420 GPSSSPYERE RVSPEHGHGP SPNSVPEARG DSPNYGGPES PMQERYSSRS PQAEE

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MISGRCAACK YLRRRCPSDC IFFPYFPPNN PERFASVHRI YGASNVAKML QGPFQQYPKR  60
CFLVLFITLT RASVRSNQRN ITHFPQIARV RGSVAFISSS VKEKKMRPIF CGNFEYDARQ  120
NELERLFGRY GKVDRVDMKS GFAFIYMEDE RDAEYAIRGL DRKEFGRKGR RLRVEWTKVA  180
NHERGTRRPG ASRRSSTNTR PSKTLFVINF DPYHTRTKDL ERHFDPYGKI VSVRIRRNFA  240
FVQYESQEDA TRALEATNMS KLMDRVISVE YAVRDDDERR DGFSPDRRSR DRSLDRGRDR  300
RRSPSPYKRE RGSPDYGRGP SPGPYRRERG SPDYGRGPSP YRRERVSPDY GRGRSPSPYR  360
RERSDHGRIS SRSPRKERRV RDSPENGAIE SPYKRDRGSP ENGAIQSPYK RDRSSPENGR  420
GPSSSPYERE RVSPEHGHGP SPNSVPEARG DSPNYGGPES PMQERYSSRS PQAEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26620.1	3e-24	LBD family protein