PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1050380.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 218aa    MW: 24749.2 Da    PI: 10.0321
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1050380.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.61.4e-221762449
                       -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        n+sn qvtfskRr g++KKA+EL++LC+aeva+i+fs+  k++ +
  Pd.00g1050380.m01 17 ANESNLQVTFSKRRSGLFKKASELCTLCGAEVAIIVFSPGRKVFSF 62
                       699************************************9999877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MVRKSKGRQK VEMVKMANES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI IVFSPGRKVF  60
SFGHPCVETL IDRYLSRNPP HHHHHQNSGT MQLIEAHRNA NVRELNGELT QISNQLEVEK  120
KRGDELNQVK KVTQAQCWWE GPLEGMEMSQ LEQLKTSLEE LKKNVARQAD RVLIQNTNPS  180
QFFVGSSSSH PNVGFNGNHV MPPHLPPHAW NPGYGRFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-78M-type_MADS family protein