PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g104860.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 429aa    MW: 47228.4 Da    PI: 7.4193
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g104860.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.89e-09140160526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        C +++r G C++Gd+C FaHg
  Pd.00g104860.m01 140 VCADYRR-GSCSRGDSCEFAHG 160
                       799****.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    
MTSVCAEQQH KFHPSHQLLS SKKSLHNTTI DIPPRKLLTR RTQTQDFISS SPEMYSPSFS  60
TADEALLLKF LPYNAAADDS DEDDANSSDP YSSDHFRMFE FKVRRCTRSR SHDWTDCPFA  120
HPGEKARRRD PRRYHYSGTV CADYRRGSCS RGDSCEFAHG VFECWLHPAR YRTEACKDGK  180
QCKRKVCFFA HTPRQLRVLP IQSSADHTAT ALSPTPKKKY GHLSNSVGSP GSNKHCCLFC  240
HSAVTTSSPT STLLGMSHLS PPLSPAGNHH SSVNGFHNSP VMSRCSGLGL GLDQMHASTA  300
GMMSYKDVLA ELMSSLEAVK FSESAAASPI NPNAPRWVDV SFNSTDDLDQ QQQFILSPST  360
PSPSRPFGGR GINFSDGDEN GSSRKSSLLG FDDNYYKPNN INDEIINGEG GSGSGSSDPD  420
LGWVNELLM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.15e-81C3H family protein