PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g104260.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GRF

Protein Properties

Length: 547aa MW: 59829.6 Da PI: 7.3281

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g104260.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.3	1.5e-24	158	201	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrC+RtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e Pd.00g104260.m01 158 DPEPGRCKRTDGKKWRCSRDVAPDQKYCERHMHRGRPRSRKHVE 201 79****************************************98 PP
2	QLQ	53.9	5.6e-19	98	130	2	34
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 +FT++Q+ +L++Q+++yKy++a++PvP +Ll++ Pd.00g104260.m01 98 PFTNTQWKELERQAMIYKYMVASLPVPRDLLFP 130 8******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence
MMMMVHHDNH RRPFSSSERG EADGPTCNRP PVTDNYPNNN SVYDVVVATA AGSSSSGGQV 60 LRGLQPFDIS NRTTNTSISD HHTAFRSPGG MTTSLGFPFT NTQWKELERQ AMIYKYMVAS 120 LPVPRDLLFP STRAPSGPTI SQSPLSSGFN LRLSNSTDPE PGRCKRTDGK KWRCSRDVAP 180 DQKYCERHMH RGRPRSRKHV EVHANTTTKR VRHDINQAPP TMSPATVSIS NTTSINKNVC 240 QTQFIESTLQ PYHQSPMFLN RDTVKAATFD SMKSASSDRE PRSLDWLMMK GEPVQMATSD 300 PQWQHLMQSK TELNSKIPFF DANSSIFTQR SEEECFLNLN SYTNFNAGGE DQPDNECNMF 360 LNPDVVSLDN PLLEETPRCF IDAWSKTVMD EDTMANSINN KDNSSAPSTG QLSPSSLTLS 420 MGGYNSINEE MGQTQMSLGN NRNGMKPGLS TWLSPASWVA SAPGGPLAEV LKPTTSAASN 480 PSSPITAATA NGELGSPLAT TVSSPSGILQ KTFASLSDSS GNSSPTLASS RIKQPEIVSV 540 WLNQNKA

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence

MMMMVHHDNH RRPFSSSERG EADGPTCNRP PVTDNYPNNN SVYDVVVATA AGSSSSGGQV  60
LRGLQPFDIS NRTTNTSISD HHTAFRSPGG MTTSLGFPFT NTQWKELERQ AMIYKYMVAS  120
LPVPRDLLFP STRAPSGPTI SQSPLSSGFN LRLSNSTDPE PGRCKRTDGK KWRCSRDVAP  180
DQKYCERHMH RGRPRSRKHV EVHANTTTKR VRHDINQAPP TMSPATVSIS NTTSINKNVC  240
QTQFIESTLQ PYHQSPMFLN RDTVKAATFD SMKSASSDRE PRSLDWLMMK GEPVQMATSD  300
PQWQHLMQSK TELNSKIPFF DANSSIFTQR SEEECFLNLN SYTNFNAGGE DQPDNECNMF  360
LNPDVVSLDN PLLEETPRCF IDAWSKTVMD EDTMANSINN KDNSSAPSTG QLSPSSLTLS  420
MGGYNSINEE MGQTQMSLGN NRNGMKPGLS TWLSPASWVA SAPGGPLAEV LKPTTSAASN  480
PSSPITAATA NGELGSPLAT TVSSPSGILQ KTFASLSDSS GNSSPTLASS RIKQPEIVSV  540
WLNQNKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53660.1	2e-37	GRF family protein