PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1035830.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 229aa    MW: 25975.2 Da    PI: 5.3805
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1035830.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85e-181461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd  lv +++q+G g+W++ ++  g+ R++k+c++rw +yl
  Pd.00g1035830.m01 14 KGPWTPEEDHVLVAYIQQYGHGNWRALPKLAGLLRCGKSCRLRWTNYL 61
                       79******************************99************97 PP
2Myb_DNA-binding50.74.1e-1667112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg+++ eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l
  Pd.00g1035830.m01  67 RGNFSREEEDAIINLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112
                        89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MVRAPCCEKM GLKKGPWTPE EDHVLVAYIQ QYGHGNWRAL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF SREEEDAIIN LHEMLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLKQNQ  120
PTTSETRAHF FSTKTEQEPE PSEKSESLDF GPASPPQCTS TNLPEADESF WSEVLSAENS  180
DQMVDQFQAI GGVPRVGVSP ADNGFCLDMY DENSIDFWLN IFPGADEIP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118LKKRLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.13e-76MYB family protein