PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1030260.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

ARF

Protein Properties

Length: 621aa MW: 68199.9 Da PI: 6.5115

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1030260.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.6	1.2e-23	45	146	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF Pd.00g1030260.m01 45 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL-- 132 89**************************996555555..89*******************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 + +++ l+v+++r+ Pd.00g1030260.m01 133 RAENGDLCVGIRRA 146 4488999**997 PP
2	Auxin_resp	114.5	9.8e-38	210	293	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa as++++FevvY+Prast+eF+vk++ v++al++++++GmRfkmafetedss++++ +Gt+++v+ ++p+rWp+S+Wr+L+ Pd.00g1030260.m01 210 AAALASKGQPFEVVYYPRASTPEFCVKASLVKAALQIRWCPGMRFKMAFETEDSSRISWfMGTISSVQVAEPLRWPESPWRLLQ 293 67889*****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 621 aa Download sequence
MADPETDEVY AKIRLVPLSA SEAGYEDDGI GGLNGSETPD KPASFAKTLT QSDANNGGGF 60 SVPRYCAETI FPRLDYSADP PVQTILAKDV HGETWKFRHI YRGTPRRHLL TTGWSTFVNH 120 KKLVAGDSIV FLRAENGDLC VGIRRAKRGI GGGPESSSGW NPTGGNCTMP YGGYSAFLRE 180 DENKLMRNGS NSNGSLMGKG KFGPESVFEA AALASKGQPF EVVYYPRAST PEFCVKASLV 240 KAALQIRWCP GMRFKMAFET EDSSRISWFM GTISSVQVAE PLRWPESPWR LLQVTWDEPD 300 LLQNVKRVSP WLVELVSNMP AIHLTPFSPP RKKMRLPQHP DFPFEGQLPM PTFSGNLLGP 360 SSPFGCLPDK TPAGMQGARH GHYGLSLSDM HLNKLQTGLF PAGFTPLDHA ATATKFSNNT 420 MTQKPTMSEN VSCLLTMAHS TQTSKKPDDV KPPQLVLFGQ PILTEQQISL SCSGDTVSPV 480 LTGNSSSDGN AEKTANLSDN SVSALHQQSL QERSYCEGFQ WYKDTRHETE PSLETGHCKV 540 FMESEDVGRT LDLSVFGSYD ELYRKLADMF GIENSETLNH VLYRDATGAV KHIGDEPLSD 600 FMKTARRLTI LMDSGSNNVG M

Sequence ? help Back to Top

Protein Sequence Length: 621 aa Download sequence

MADPETDEVY AKIRLVPLSA SEAGYEDDGI GGLNGSETPD KPASFAKTLT QSDANNGGGF  60
SVPRYCAETI FPRLDYSADP PVQTILAKDV HGETWKFRHI YRGTPRRHLL TTGWSTFVNH  120
KKLVAGDSIV FLRAENGDLC VGIRRAKRGI GGGPESSSGW NPTGGNCTMP YGGYSAFLRE  180
DENKLMRNGS NSNGSLMGKG KFGPESVFEA AALASKGQPF EVVYYPRAST PEFCVKASLV  240
KAALQIRWCP GMRFKMAFET EDSSRISWFM GTISSVQVAE PLRWPESPWR LLQVTWDEPD  300
LLQNVKRVSP WLVELVSNMP AIHLTPFSPP RKKMRLPQHP DFPFEGQLPM PTFSGNLLGP  360
SSPFGCLPDK TPAGMQGARH GHYGLSLSDM HLNKLQTGLF PAGFTPLDHA ATATKFSNNT  420
MTQKPTMSEN VSCLLTMAHS TQTSKKPDDV KPPQLVLFGQ PILTEQQISL SCSGDTVSPV  480
LTGNSSSDGN AEKTANLSDN SVSALHQQSL QERSYCEGFQ WYKDTRHETE PSLETGHCKV  540
FMESEDVGRT LDLSVFGSYD ELYRKLADMF GIENSETLNH VLYRDATGAV KHIGDEPLSD  600
FMKTARRLTI LMDSGSNNVG M

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein