PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1029880.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 251aa    MW: 28683.8 Da    PI: 10.0235
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1029880.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.91.3e-28959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       k+ien   rqvtf+kRrng+lKKA+ELSvLCdaevavi+f+stg+lye+ss
  Pd.00g1029880.m01  9 KKIENVNSRQVTFTKRRNGLLKKAKELSVLCDAEVAVIVFASTGRLYEFSS 59
                       68***********************************************96 PP
2K-box55.42.7e-1910018317100
              K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                         +++++ L++ei +L+    +++G++L+ Ls+keLqqLe+qL +++  +++kK+e+lle ++ ++  e+++ een++Lrk+l+e
  Pd.00g1029880.m01 100 PNRDVNGLQNEIATLRLACMRMMGKELHGLSYKELQQLEEQLREGVLFVKQKKEEILLETLKSSRLLEQRAMEENENLRKQLAE 183
                        5678999*********999**************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MGRGRIEIKK IENVNSRQVT FTKRRNGLLK KAKELSVLCD AEVAVIVFAS TGRLYEFSST  60
SMPHTLLRYK KGGVIDYPQE RSSEPATKEP NFVQKRKVEP NRDVNGLQNE IATLRLACMR  120
MMGKELHGLS YKELQQLEEQ LREGVLFVKQ KKEEILLETL KSSRLLEQRA MEENENLRKQ  180
LAEMRQTHKP TWQIVPASDH PLESSKAVSS YEPDTYLHLG LSSSSDAHHQ KRKAAKIERN  240
SNDSGSQVVS H
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.11e-54MIKC_MADS family protein