PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1026960.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 508aa MW: 58793.4 Da PI: 10.8065

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1026960.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	61.4	2.4e-19	5	52	1	48
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllka 48 +CaaCk+lrr+C++dC++ pyfp ++p++fa vh+++Gasnv k+l+ Pd.00g1026960.m02 5 RCAACKYLRRRCPSDCIFFPYFPPNNPERFASVHRIYGASNVAKMLQG 52 6********************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence
MISGRCAACK YLRRRCPSDC IFFPYFPPNN PERFASVHRI YGASNVAKML QGPFQQYPKR 60 CFLVLFITLT RASVRSNQRN ITHFPQIARV RGSVAFISSS VKEKKMRPIF CGNFEYDARQ 120 NELERLFGRY GKVDRVDMKS GFAFIYMEDE RDAEYAIRGL DRKEFGRKGR RLRVEWTKVA 180 NHERGTRRPG ASRRSSTNTR PSKTLFVINF DPYHTRTKDL ERHFDPYGKI VSVRIRRNFA 240 FVQYESQEDA TRALEATNMS KLMDRVISVE YAVRDDDERR DGFSPDRRSR DRSLDRGRDR 300 RRSPSPYKRE RGSPDYGRGP SPGPYRRERG SPDYGRGPSP YRRERVSPDY GRGRSPSPYR 360 RERSDHGRIS SRSPRKERVS ADRIRDRSRS PYGRERPGAD NGHAPIRSPY KRDRDSPENG 420 AIESPYKRDR GSPENGAIQS PYKRDKSSPE NGRGPSSSPY ERERVSPEHG RGPSPNSVPE 480 ARGDSPNYGG PESPMQERYS SRSPQAEE

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence

MISGRCAACK YLRRRCPSDC IFFPYFPPNN PERFASVHRI YGASNVAKML QGPFQQYPKR  60
CFLVLFITLT RASVRSNQRN ITHFPQIARV RGSVAFISSS VKEKKMRPIF CGNFEYDARQ  120
NELERLFGRY GKVDRVDMKS GFAFIYMEDE RDAEYAIRGL DRKEFGRKGR RLRVEWTKVA  180
NHERGTRRPG ASRRSSTNTR PSKTLFVINF DPYHTRTKDL ERHFDPYGKI VSVRIRRNFA  240
FVQYESQEDA TRALEATNMS KLMDRVISVE YAVRDDDERR DGFSPDRRSR DRSLDRGRDR  300
RRSPSPYKRE RGSPDYGRGP SPGPYRRERG SPDYGRGPSP YRRERVSPDY GRGRSPSPYR  360
RERSDHGRIS SRSPRKERVS ADRIRDRSRS PYGRERPGAD NGHAPIRSPY KRDRDSPENG  420
AIESPYKRDR GSPENGAIQS PYKRDKSSPE NGRGPSSSPY ERERVSPEHG RGPSPNSVPE  480
ARGDSPNYGG PESPMQERYS SRSPQAEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26620.1	4e-24	LBD family protein