PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g101810.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 694aa    MW: 78399 Da    PI: 5.894
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g101810.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS375.47.2e-1153216902372
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        +lL+ecA+av s d++ a++lL+++++++sp+g ++qRla+yf+e+L+arl++  s  y+ l   +ts   ++e l+a+++++ ++P+ k+ 
  Pd.00g101810.m01 321 CKLLTECAQAVGSYDQQSASELLKQIRQHSSPYGYATQRLAHYFAEGLEARLSGVRSLSYQPLLFMHTS---TTEFLKAYQVYVSACPFKKMF 410
                       589***************************************************777778777777776...9******************** PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                       h+ aN++I++ +e+++r+HiiDf+is+GlQW++L+q+L+++++gpp+lRiT+++ p++g   +e++eetg+rLak+ ++  vpfe+nv +ak+
  Pd.00g101810.m01 411 HFFANRTIMKQTEKATRLHIIDFGISYGLQWACLIQSLSEKTGGPPNLRITAIELPQPGfrPAERIEETGRRLAKYSKRYSVPFEYNV-IAKK 502
                       **********************************************************9****************************9.7*** PP

              GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                       +e+++leeL+++++E+++Vn++++l++++de+v ++++rd+vL+l+k+++P+++ +   +  +n++ F++rf + l ++ alfd++ea++pr+
  Pd.00g101810.m01 503 WETIRLEELQIDRNEVIVVNCMHRLKQIPDETVMMNNPRDAVLNLIKRINPDLFLHGVVNGTYNAPAFVTRFKQLLFHFHALFDMYEATVPRD 595
                       ********************************************************************************************* PP

              GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsv 370
                       +e+r   Ere++g +ivnv+aceg er+er et+++W++r  +aGFk++pl+ +  k+++++ ++++  + + +e++ +++++gWk+r ++++
  Pd.00g101810.m01 596 NEHRLLFEREIFGTDIVNVIACEGLERVERPETYKQWQARYVRAGFKQLPLDRELLKKMRTMSKMMGyHKDFGIEDDGEWMLQGWKGRIIIAL 688
                       ******************************************************************99999********************** PP

              GRAS 371 Sa 372
                       Sa
  Pd.00g101810.m01 689 SA 690
                       98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    
MEELNFGHGS NSVSSDQNLV NGLQVNHEPT NKLLLPANFD RPNDSSTSSE GDTVDSTDCN  60
LPGLKYISDI LLEEDLEGKP CMLEDILGLQ AAEKSFYDAL NQKDPPLPNQ PSFSVYQSFE  120
NSDGGFQSSN GSISGFQSSN GSIAAKTGNV WDFSETSHFQ TSPLESLSDI TSVSDSFSDM  180
QSLGNYRGVG EGNEIIDLEG YQCMPPGPNT LYRNLASVPE NYGYNSTNGS KGKKNRQRED  240
GHYTEEGRGN KQSAAFPDDS DPQEMFDKVL QGMNPESESC FHDESLNAEG TRKLQDNKQS  300
KGSKTTCSRK PNSNRQVVDL CKLLTECAQA VGSYDQQSAS ELLKQIRQHS SPYGYATQRL  360
AHYFAEGLEA RLSGVRSLSY QPLLFMHTST TEFLKAYQVY VSACPFKKMF HFFANRTIMK  420
QTEKATRLHI IDFGISYGLQ WACLIQSLSE KTGGPPNLRI TAIELPQPGF RPAERIEETG  480
RRLAKYSKRY SVPFEYNVIA KKWETIRLEE LQIDRNEVIV VNCMHRLKQI PDETVMMNNP  540
RDAVLNLIKR INPDLFLHGV VNGTYNAPAF VTRFKQLLFH FHALFDMYEA TVPRDNEHRL  600
LFEREIFGTD IVNVIACEGL ERVERPETYK QWQARYVRAG FKQLPLDREL LKKMRTMSKM  660
MGYHKDFGIE DDGEWMLQGW KGRIIIALSA LKPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-172GRAS family protein