PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g101800.m02
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 536aa    MW: 60240.9 Da    PI: 6.1348
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g101800.m02genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS189.12.9e-583355193189
              GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                       +lL++cA+av+s d++ a++lL+++++++sp+gd+ +Rla+yf+ +L+arla++ +  y+ l + +t+    +e l+a++l++  +P+ k+ h
  Pd.00g101800.m02 335 TLLTQCAQAVASYDQRTASELLKQIRKHSSPYGDAAERLAHYFADGLEARLAGTRTPSYSPLLSIQTP---AAEILKAYQLYVTHCPYKKMLH 424
                       69***************************************************999999999888888...8********************* PP

              GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                       +  N++I++ +e+++r+HiiDf+is+G+QWp+++q L++Rp+gpp++R+T+++ p++g   +e++eetg+rL k+A++++vpf+++v +a+++
  Pd.00g101800.m02 425 FFSNRTIMKLAEKATRLHIIDFGISYGFQWPCFIQRLSKRPGGPPNIRMTAIELPQPGfrPTERVEETGRRLDKYAKRFNVPFQYKV-IAQKW 516
                       *********************************************************9****************************9.69988 PP

              GRAS 187 edl 189
                       e++
  Pd.00g101800.m02 517 ETI 519
                       876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    
MDTLLERLSV SKEKFHCGHG SIPVHSNQNL VNGFQVNHEP ANPPFLPTNS DHPSDSSTSL  60
SSGSDGDTFD ISDCSQPVLK YISDILLEED LEGKPCMLQD CLALQAAEKS FYDVLNPKDP  120
PSPNQPPLSD HQSFENSDDD STHSCHRSND YRAEKTDWVS DSSETSQVQS SLVESPPDTL  180
LASDSLYGNF GGVGEARKLL PNENFGIIDL EKYQLMSQGP NTLFRNLASK RENDGYNSTN  240
RSKEKKNYER EDGDYAEEGR SNKQSAASAD DSEPQEMFDK VLLCSVNHES ESCSRDEPLK  300
NEGSGKLKPN KQSKGSKTAR SKKQNNKREV VDFSTLLTQC AQAVASYDQR TASELLKQIR  360
KHSSPYGDAA ERLAHYFADG LEARLAGTRT PSYSPLLSIQ TPAAEILKAY QLYVTHCPYK  420
KMLHFFSNRT IMKLAEKATR LHIIDFGISY GFQWPCFIQR LSKRPGGPPN IRMTAIELPQ  480
PGFRPTERVE ETGRRLDKYA KRFNVPFQYK VIAQKWETIH DGQQSERYCP KVDQEN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.14e-94GRAS family protein