PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1017210.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 606aa    MW: 68609.1 Da    PI: 5.9889
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1017210.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.52e-1476134265
           trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 
                        W+++e laL+++r+ m++++ +       We+vs+k++e gf+rs+++Ckek+e+ ++ + +i+
  Pd.00g1017210.m01  76 WSNDELLALLRIRSTMDNWFPEF-----TWEHVSRKLAELGFKRSAEKCKEKFEEESRCFNNIN 134
                        ********************998.....9**************************999998876 PP
2trihelix97.61.1e-30432521186
           trihelix   1 rWtkqevlaLiearremeerlrrgk.....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        rW+++evlaLi++r ++ ++ ++++      k+plWe++s+ m e+g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql 
  Pd.00g1017210.m01 432 RWPRDEVLALINLRCSLFNNGSADQdkngvVKAPLWERISQGMLEKGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SLDSRTCPYFHQLS 521
                        8********************9865556669********************************************8.9999********95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    
MAQEQTKIAL FHTLGSCLLE QINVTVPAGV QLHRQSATPK NHEEKKESNL VSINNNLEIE  60
RERSSSISQV PISDPWSNDE LLALLRIRST MDNWFPEFTW EHVSRKLAEL GFKRSAEKCK  120
EKFEEESRCF NNINFTKNYR FLSDLEELCH GGNDDQNPDQ AAAGAENKNQ QKLEKPSNNE  180
GDEDNRCQIL DEDSTRNETV VGSKEFDDHD KEKEVVERTK SNVVRKRKRQ RRFEMLKGFC  240
EDIVNRMMAQ QEEMHSKLLE DMVKRSEEKL AREEAWKKQE MDRMNKELEI MAHEQAIAGD  300
RQATIIKFLK KFASSSSSST SSEPSPDHDH RTNSSSLINQ AQNPNHPTCS QEKEPTSSTI  360
IQKSGTSSHT PNNPSTPISL TETLEPQSPS SSTLAPTPTI PKVPIPPENP SSDHLNTQNP  420
TSNDDKQDLG KRWPRDEVLA LINLRCSLFN NGSADQDKNG VVKAPLWERI SQGMLEKGYK  480
RSAKRCKEKW ENINKYFRKT KDVNKKRSLD SRTCPYFHQL STLYNQGILV PPSDHIQGPD  540
HQTSSASPEN QSLASPVVPQ TGLDSSDQGR CSAEADDDLS KHNIIGEGEK NNTVQPVPAA  600
AFDFEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226231KRKRQR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-105Trihelix family protein