PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1005540.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 264aa    MW: 30220.1 Da    PI: 8.2027
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1005540.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS113.13.6e-35114538189
               GRAS  38 mqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLl 129
                        mqRlaa f+ ALa rl+++++++ kal+  ++++k + ++  a+ +f +++P+l f++ +  +++l+a++ ++ +Hi+D++   +  W++Ll
  Pd.00g1005540.m01   1 MQRLAAQFASALAVRLVKNWPGIHKALNYDTKRPKLELDQ--ARIIFTKAFPYLGFAYAIIARTLLQAMSADRVIHIVDLGSADPKLWAPLL 90 
                        8******************************998666665..6668********************************************** PP

               GRAS 130 qaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                        q++a+ p+gpp+l+iT v+     +k  le++g +L k Ae+l++pf++n+l   +l +l
  Pd.00g1005540.m01  91 QSFAALPDGPPHLKITCVHG----NKAVLEKLGPKLVKEAEALDMPFQYNPL-NVSLREL 145
                        ********************....99*************************7.4455555 PP
2GRAS98.31.1e-30151263256374
               GRAS 256 rflealeyysalfdsleak...lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                        rf+e l+yysa+fdslea+   l++ seer ++E++ +grei+n+ a egaer+erhe+++ W  r+ e+GFkpv+l  + +++ k      
  Pd.00g1005540.m01 151 RFIEGLHYYSAIFDSLEASfggLSSSSEERFVLEEM-FGREIENIMAWEGAEREERHERYAWWMVRFCEVGFKPVRLWLDSMEDSK------ 235
                        9****************9933344555999999999.****************************************999998875...... PP

               GRAS 345 ksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          +gy++ +++ sl+++W++rpL++vSaW+
  Pd.00g1005540.m01 236 --KGYKIISQKTSLMICWNERPLYAVSAWT 263
                        ..79*************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MQRLAAQFAS ALAVRLVKNW PGIHKALNYD TKRPKLELDQ ARIIFTKAFP YLGFAYAIIA  60
RTLLQAMSAD RVIHIVDLGS ADPKLWAPLL QSFAALPDGP PHLKITCVHG NKAVLEKLGP  120
KLVKEAEALD MPFQYNPLNV SLRELTKTCL RFIEGLHYYS AIFDSLEASF GGLSSSSEER  180
FVLEEMFGRE IENIMAWEGA EREERHERYA WWMVRFCEVG FKPVRLWLDS MEDSKKGYKI  240
ISQKTSLMIC WNERPLYAVS AWTC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-40GRAS family protein