PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g100400.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 469aa MW: 52172.3 Da PI: 6.7763

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g100400.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.2	1.6e-17	160	206	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd +l+++vkq+G + W+ Ia+++ gR +kqc++rw+++l Pd.00g100400.m01 160 KGQWTDEEDRKLIRLVKQYGVRKWAQIAEKLV-GRAGKQCRERWHNHL 206 799***************************.***********97 PP
2	Myb_DNA-binding	57	4.4e-18	212	254	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ +lv+a+++ G++ W+ Ia++++ gRt++ +k++w+ Pd.00g100400.m01 212 KDSWTEEEEMILVEAHTEVGNR-WAEIAKRIP-GRTENAIKNHWN 254 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MEGEGGGEEG GGGYGVYGLI NNTQPHHPHH HHQNMHRPGP PLTAIDRFLW GIQSNFSHQN 60 NASSKENVVS TNGLFGFSSF GGAIGHEASC WPSYGAGGQY PQEVSFLDGL LGDHGEALMM 120 SWSGQAEQNP NTGFIEEAKV SERRVGKRAR KGLTAAALIK GQWTDEEDRK LIRLVKQYGV 180 RKWAQIAEKL VGRAGKQCRE RWHNHLRPDI KKDSWTEEEE MILVEAHTEV GNRWAEIAKR 240 IPGRTENAIK NHWNATKRRQ NSRRKNRQAE GKDGNNNKKP HNNTPTSSST LSHENPSKTH 300 LNILATEPSD QSTTSNCCDS PLNLGDTLYD DEELHFMQTF FTNNVHTFNP HQQQPSHSID 360 SSNNIGLIVS PVEPTQNAIN PTTSTTPTPL YSDLYLSYLL NGSANSSSSF SSTDHHHLGF 420 YNTSMEYLMA HDQYHEAAAA ASSNEKREMD LIEMVSSSQF ALGTSRTSF

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MEGEGGGEEG GGGYGVYGLI NNTQPHHPHH HHQNMHRPGP PLTAIDRFLW GIQSNFSHQN  60
NASSKENVVS TNGLFGFSSF GGAIGHEASC WPSYGAGGQY PQEVSFLDGL LGDHGEALMM  120
SWSGQAEQNP NTGFIEEAKV SERRVGKRAR KGLTAAALIK GQWTDEEDRK LIRLVKQYGV  180
RKWAQIAEKL VGRAGKQCRE RWHNHLRPDI KKDSWTEEEE MILVEAHTEV GNRWAEIAKR  240
IPGRTENAIK NHWNATKRRQ NSRRKNRQAE GKDGNNNKKP HNNTPTSSST LSHENPSKTH  300
LNILATEPSD QSTTSNCCDS PLNLGDTLYD DEELHFMQTF FTNNVHTFNP HQQQPSHSID  360
SSNNIGLIVS PVEPTQNAIN PTTSTTPTPL YSDLYLSYLL NGSANSSSSF SSTDHHHLGF  420
YNTSMEYLMA HDQYHEAAAA ASSNEKREMD LIEMVSSSQF ALGTSRTSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	6e-56	MYB family protein