PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1001960.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 314aa    MW: 34861.2 Da    PI: 9.3696
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1001960.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.81.4e-1816104185
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                        +Wt++e +aLi ++++++++l+r++l++ +We v++++          ++++qC++k+e+l+kry+++k++ + +  +  st+ +f+ +
  Pd.00g1001960.m01  16 CWTNDEAQALISIYKDTWSALGRSNLRASDWETVAAALasrcPLVSPPKTAIQCRHKMEKLRKRYRNEKQRGSTHPGRFLSTWDLFRPM 104
                        8************************************95332233448899***********************999999999999877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    
MAAPPQPKPR KFPPPCWTND EAQALISIYK DTWSALGRSN LRASDWETVA AALASRCPLV  60
SPPKTAIQCR HKMEKLRKRY RNEKQRGSTH PGRFLSTWDL FRPMFDLECE APALFGSDPD  120
RETRAGVQFG RGFRVRKDEN DRYLAESDQN LSDPDEETRK GAGVGGGFRV NVGVRGKGRE  180
NSSFSAGFDR YVSRGNGGAR GFPVKSSGDR NLGPSEFRSK SYGNTCNEKF SPKLNLKRDC  240
SYGAGTISGF YKKFRGGLDS DGFGKEVEDP IGQMASSVEF LGDVYGAEAI CYFALHSVNE  300
KDCIIGWMMC LNKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-27Trihelix family protein